MmuINT0162672 @ mm9
Intron Retention
Gene
ENSMUSG00000037129 | Tmprss13
Description
transmembrane protease, serine 13 [Source:MGI Symbol;Acc:MGI:2682935]
Coordinates
chr9:45145129-45146501:+
Coord C1 exon
chr9:45145129-45145172
Coord A exon
chr9:45145173-45146338
Coord C2 exon
chr9:45146339-45146501
Length
1166 bp
Sequences
Splice sites
5' ss Seq
CCCGTAAGC
5' ss Score
4.37
3' ss Seq
TCCTCTCCATTTTCTCCCAGACT
3' ss Score
8.38
Exon sequences
Seq C1 exon
GTCGCAATGTCCTTCCCGGCGGTATGTCTCCCTCCAGTGTTCCC
Seq A exon
GTAAGCTGTTTCTCTTTTTGGAGTGTGGTCTATGGGGGTGGGATGAGATGCTGTCTAAGGAGCTCAGTCCTGTTACCTGTCATTCCCAGGGAGTCATATGAGTCTCCTAAACCTTTGCTGGAAACTGAGTGAGGACAGCAGGTGTGGGCTAGCTGATAGTTTTGTGTCAACATTCACTTGAATGCTTGCCCATGGAGGATACTGCATCAGCGTCTGTACAGACAGGGCAGGAGTTACTGATTCAGAGCCCTGCAAGGCAATAGCCATTACTGGGCACTGTGCCTTGCCTAAGATCAGAAACCAGGCAGGTGGGGAGCTGACACCTGACCTTGGAGTTGGCCCCTAAGCCCTAACTGTGAGTGACCCCACAAGGTTTATGTTCTTGGTGGTGAAGCCAGGGTGCAGGCTGTCCCACTGTTGTGGCTGTAGTGCCCACTGCTCAGATGGTGTGCCACCCTCTCTCCTCTGCAAGCAGAAAAGCCCCATACCTGAGCTCACTCAGCAGGCTGCCCCTCCCCGCCCTGGGCTTGACTCATTCGAGACTTGTTCCCTGTGCAAGCCCAGCTATGCATCATAGGAAATCTATTTATTTCTCCTTCATTTTGAAATGAGAGACTGCCAGACTAGTGCTTACCAGTTCAGGGTTGTGATAGCATCTTTTGCTTTTCTGAGCCCTTGATGACAGTCCTGGGATTCACCCTCTTAACCAAGCCAAACTCCACGCTGAAGCACTGGACATGGAGTGAGCATTTGCCAGATGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGAAGGAAGGAAGAAAAAGAGAGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGGAACAAGGTGGAAGCTGCCTGGGGTCAGACTTCACTAGACACCTCCAGAAGGCTAAGACCACCTTGTACTACTTCTGCTTGGACAGGGAATAGGTGTGCCACATTAGACTCTTTGGACAAAGGGTGACCTTCAGTTGCCTGCCCGGAGCTCGAGAAGAGCAGGAGAGGCTCTAAAAGAAGCATATGACATGTTCTGTCCTCTCCATTTTCTCCCAG
Seq C2 exon
ACTGTGGTTTGAGAGCTATGACCGGGCGGATCGTGGGAGGGGCTCTGACCTCGGAGAGCAAGTGGCCCTGGCAAGTTAGCCTGCACTTCGGCACCACCCACATCTGTGGGGGCACACTCATCGATGCCCAGTGGGTGCTCACCGCTGCCCACTGTTTCTTTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037129-Tmprss13:NM_001013373:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=FE(16.5=100)
A:
NA
C2:
PF154941=SRCR_2=PD(5.5=9.1),PF0008921=Trypsin=PU(19.2=80.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCGCAATGTCCTTCCCGG
R:
ACAAAGAAACAGTGGGCAGCG
Band lengths:
207-1373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: