MmuINT0127459 @ mm9
Intron Retention
Gene
ENSMUSG00000049620 | Prss33
Description
protease, serine, 33 [Source:MGI Symbol;Acc:MGI:2661234]
Coordinates
chr17:23971965-23972266:-
Coord C1 exon
chr17:23972243-23972266
Coord A exon
chr17:23972128-23972242
Coord C2 exon
chr17:23971965-23972127
Length
115 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
GCCCTCTTGTCCTGTCACAGCTT
3' ss Score
8.06
Exon sequences
Seq C1 exon
GAACCAGGATGCAGGAGTGTGCAG
Seq A exon
GTAAGAAAGGTTGTGAACCACTTCCTCCTCAGCTCGGCCCTGTCCCCTCTTCCTATGCTTACGTCCCAGACTCCAAGTCCCAGCCGAGCCTCAGTGCCCTCTTGTCCTGTCACAG
Seq C2 exon
CTTGTGGGCAGCCCCGCATGTCCAGCCGGATCGTTGGGGGCCGGGATGCTCAGGATGGAGAGTGGCCGTGGCAAACAAGCATTCAGCACCGTGGAGCCCATGTGTGCGGAGGGTCACTCATTGCACCCCAGTGGGTGTTGACGGCAGGTCACTGTTTCCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049620-Prss33:NM_001081399:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=NA C2=0.050
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(18.5=80.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACCAGGATGCAGGAGTGTG
R:
CTAGGGAAACAGTGACCTGCC
Band lengths:
187-302
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: