HsaINT1028203 @ hg38
Intron Retention
Gene
ENSG00000103355 | PRSS33
Description
protease, serine 33 [Source:HGNC Symbol;Acc:HGNC:30405]
Coordinates
chr16:2785799-2786121:-
Coord C1 exon
chr16:2786089-2786121
Coord A exon
chr16:2785962-2786088
Coord C2 exon
chr16:2785799-2785961
Length
127 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CGCCCCTGGTCCTTTTCTAGCCT
3' ss Score
7.93
Exon sequences
Seq C1 exon
GAGCTGCTGGGACTCAGGGAAGGAAGTCTGCAG
Seq A exon
GTGAGGAAGCCTCGGAGTCCACCCGAGTCAGCCCCTCCTGGACCTCGGCCCCGTGTCTCCCCACCAACACCTGCCTCCCAGGCCCCAGGTCCTCAGCCAACCCTCACCGCCCCTGGTCCTTTTCTAG
Seq C2 exon
CCTGCGGGCAGCCCCGCATGTCCAGTCGGATCGTTGGGGGCCGGGATGGCCGGGACGGAGAGTGGCCGTGGCAGGCGAGCATCCAGCATCGTGGGGCACACGTGTGCGGGGGGTCGCTCATCGCCCCCCAGTGGGTGCTGACAGCGGCGCACTGCTTCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000103355:ENST00000570702:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.278 A=NA C2=0.186
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(18.5=80.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGCTGGGACTCAGGG
R:
CGCTGTCAGCACCCACTG
Band lengths:
178-305
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains