RnoINT0118716 @ rn6
Intron Retention
Gene
ENSRNOG00000029279 | Prss33
Description
serine protease 33 [Source:RGD Symbol;Acc:1583742]
Coordinates
chr10:13175120-13175423:-
Coord C1 exon
chr10:13175400-13175423
Coord A exon
chr10:13175283-13175399
Coord C2 exon
chr10:13175120-13175282
Length
117 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
CCTTTCCGGTCCTGTCACAGCTT
3' ss Score
8.23
Exon sequences
Seq C1 exon
GGGCCAGGATGCAGGAGTGTGCAG
Seq A exon
GTAAGGAAGGTTGGGAACCACTTCCTCCTCAGTTCGGCCCTGTCCCCCTTCCTACACCTACTTCCCAGACCCCCAAGTCCCAGCCGACCCTCAGTGCCCTTTCCGGTCCTGTCACAG
Seq C2 exon
CTTGTGGGCAGCCCCGTATGTCCAGTCGGATCGTTGGGGGGCGGGACGCTCAGGATGGAGAGTGGCCGTGGCAAACAAGCATTCAGCACCGTGGAGCGCATGTGTGCGGAGGGTCACTCATTGCACCCCAGTGGGTGTTGACGGCAGGTCACTGCTTCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029279:ENSRNOT00000034380:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.036
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(18.5=80.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCAGGATGCAGGAGTGT
R:
CTGGAGAAGCAGTGACCTG
Band lengths:
186-303
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]