MmuEX1026931 @ mm10
Exon Skipping
Gene
ENSMUSG00000034848 | Ttc21b
Description
tetratricopeptide repeat domain 21B [Source:MGI Symbol;Acc:MGI:1920918]
Coordinates
chr2:66239523-66242788:-
Coord C1 exon
chr2:66242631-66242788
Coord A exon
chr2:66241377-66241551
Coord C2 exon
chr2:66239523-66239607
Length
175 bp
Sequences
Splice sites
3' ss Seq
ACTTTGGATGTTTTCGATAGAAA
3' ss Score
3.92
5' ss Seq
AAGGTACAA
5' ss Score
6.82
Exon sequences
Seq C1 exon
GTTCTGTGCCTTGAGATTCGACAGAATTATTCCGGAGCTCTGGAGACCGTGAGCCAGATAATTGTAAACTTTCCAAGCTTCCTTCCTGCCTTTGAGAAGAAAATGAAATTACAACTGGCTTTACAGGATTGGGATCAGACAGTGGAGACAGCACAAAG
Seq A exon
AAAGGCAGAGACTGCAGGAAGATGACCCTGGGCTGTTTGGTCTGAACTTGAAGGACAGTAAGTTATCGATGGCCTGTTGCAAAGTGCTCAGTGGGCCTGGCTGATGGGAAGGTGGCTTAATAACCAAGAAGTAGACATTATTACTATTCCCCCTTGGCAGCTGAACAAATTTAAG
Seq C2 exon
GCTGCTGCTTCAAGACAATCACAACGTGGAGGCGCTGAGGATGCTGGCTCTGTATTATCTGTGTAGGGAAGGGGACGTAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034848-'10-11,'10-10,11-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.008 A=1.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSMUST00000102718fB18817
Other Inclusion Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGTGCCTTGAGATTCGACA
R:
CTTCTCTACGTCCCCTTCCCT
Band lengths:
242-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types