RnoEX0094658 @ rn6
Exon Skipping
Gene
ENSRNOG00000005868 | Ttc21b
Description
tetratricopeptide repeat domain 21B [Source:RGD Symbol;Acc:1565122]
Coordinates
chr3:52340068-52343276:-
Coord C1 exon
chr3:52343119-52343276
Coord A exon
chr3:52341822-52341997
Coord C2 exon
chr3:52340068-52340152
Length
176 bp
Sequences
Splice sites
3' ss Seq
GGACTTTCGATATGTTTTAGCTA
3' ss Score
5.33
5' ss Seq
AAGGTACAA
5' ss Score
6.82
Exon sequences
Seq C1 exon
GTACTGTGCCTTGAGATGCGACAGAATTATTCTGGAGCTCTGGAGACTGTGAGTCAGATAATTGTGAACTTCCCGAGCTTCCTTCCTGCTTTTGAGAAGAAAATGAAATTACAACTGGCTTTGCAGGATTGGGATCAGACGGTGGAGACGGCGCAAAG
Seq A exon
CTAGGAAGGCAGAGACTGCAGAAAGATGCAGACCCCAGGCCGCTTGGTCTGAACATCTTGAATGAAGTTATGAATGGCCTGTTGCAAAGTGCTCAGAGGGCCTGGCTGATGGGAAGGTGGTTAATACCCAAGAGGTAGACATCAGTACTCCCACTTTGCAGATGAACGAACGTAAG
Seq C2 exon
GTTGCTGCTTCAGGACGGCCACAATGTGGAGGCGCTGAGAATGCTGGCTTTATATTATCTGTGTAGGGAAGGGGACATAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005868_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.004 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000007832fB15787
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTGTGCCTTGAGATGCGAC
R:
CTTCTCTATGTCCCCTTCCCT
Band lengths:
242-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]