MmuEX1026945 @ mm10
Exon Skipping
Gene
ENSMUSG00000024078 | Ttc27
Description
tetratricopeptide repeat domain 27 [Source:MGI Symbol;Acc:MGI:1921446]
Coordinates
chr17:74799184-74829590:+
Coord C1 exon
chr17:74799184-74799411
Coord A exon
chr17:74805157-74805287
Coord C2 exon
chr17:74829492-74829590
Length
131 bp
Sequences
Splice sites
3' ss Seq
GTTTACGGTGCTTTTCTCAGAGA
3' ss Score
7.3
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GCAGAAGAAATACTTAGGCAAGAACTGGAGAAAAAGGAAACACCAGGTTTATATTGCTTACTTGGAGATGTCCTGCAGGACCATTCCTGCTACGACAAGGCCTGGGAGCTGTCCCGGCATCGCAGTGCACGTGCCCAGCGCTCCAAAGCTCTCCTCCATCTTCGGAACAAGGAGTTTCGGGAATGTGTGGAGTGCTTCGAGCGCTCAGTGAAGATCAATCCCATGCAG
Seq A exon
AGAGCCAGAAGACACGCACCACTTACATTAGTGCTGCCATCCACTCAGACCCACCCATTTCCCCCCACAAGACTCAAGAAACTAGCAAAATTTAATCTTGGGCTTCAGGGACCTAAGTACTAAACACTGAG
Seq C2 exon
CTCGGGGTCTGGTTCTCTCTAGGCTGCGCCTACTTGGCCTTGGAAGACTATGGTGGATCAGCAAAGGCGTTTCAGCGTTGTGTGACCCTAGAACCCGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024078_MULTIEX2-1/6=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=0.250 C2=0.000
Domain overlap (PFAM):
C1:
PF0051523=TPR_1=WD(100=44.7),PF134141=TPR_11=PU(1.5=1.3)
A:
NO
C2:
PF134141=TPR_11=FE(47.1=100)
Main Inclusion Isoform:
ENSMUST00000024882fB18830
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTGGAGATGTCCTGCAGGA
R:
TGAAACGCCTTTGCTGATCCA
Band lengths:
243-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types