MmuEX0049502 @ mm10
Exon Skipping
Gene
ENSMUSG00000024078 | Ttc27
Description
tetratricopeptide repeat domain 27 [Source:MGI Symbol;Acc:MGI:1921446]
Coordinates
chr17:74799184-74856606:+
Coord C1 exon
chr17:74799184-74799411
Coord A exon
chr17:74829492-74829590
Coord C2 exon
chr17:74856409-74856606
Length
99 bp
Sequences
Splice sites
3' ss Seq
CTGAATTTTGATTTCTGCAGCTC
3' ss Score
7.68
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
GCAGAAGAAATACTTAGGCAAGAACTGGAGAAAAAGGAAACACCAGGTTTATATTGCTTACTTGGAGATGTCCTGCAGGACCATTCCTGCTACGACAAGGCCTGGGAGCTGTCCCGGCATCGCAGTGCACGTGCCCAGCGCTCCAAAGCTCTCCTCCATCTTCGGAACAAGGAGTTTCGGGAATGTGTGGAGTGCTTCGAGCGCTCAGTGAAGATCAATCCCATGCAG
Seq A exon
CTCGGGGTCTGGTTCTCTCTAGGCTGCGCCTACTTGGCCTTGGAAGACTATGGTGGATCAGCAAAGGCGTTTCAGCGTTGTGTGACCCTAGAACCCGAT
Seq C2 exon
GTCCTTAAAATTCTGGTCCAGGCAGTGGTTAATGATATGACCGACCGAAGTGGAGCTGTTGCCTCCAGCCTCAAAGGCAAGCTGCAGGAGTTGTTTGGCAGAATAACTTCAAGGGTGACCAATGACGGAGAAGTCTGGAGACTGTATGCCCAAGTGCATGGGAATGGGCAGAGTGAGAAGCCAGATGAGAACGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024078_MULTIEX2-2/6=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=0.000 C2=0.076
Domain overlap (PFAM):
C1:
PF0051523=TPR_1=WD(100=44.7),PF134141=TPR_11=PU(1.5=1.3)
A:
PF134141=TPR_11=FE(47.1=100)
C2:
NO
Main Skipping Isoform:
ENSMUST00000024882fB18830
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGTGTGGAGTGCTTCGAGC
R:
CTCCGTCATTGGTCACCCTTG
Band lengths:
177-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types