DreEX0081950 @ danRer10
Exon Skipping
Gene
ENSDARG00000007918 | ttc27
Description
tetratricopeptide repeat domain 27 [Source:ZFIN;Acc:ZDB-GENE-030102-1]
Coordinates
chr17:22896950-22898901:+
Coord C1 exon
chr17:22896950-22897177
Coord A exon
chr17:22898348-22898446
Coord C2 exon
chr17:22898849-22898901
Length
99 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTTTCTCTGCTGCAGTTG
3' ss Score
10.55
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
GCGGAGGAGATTTTGAGGCGTGAGTTGGAGAAAAAGGAGACGCCGTCGCTGTACTGTCTGCTGGGCGATGTACTGAAGGATCCGCAGTATTATGACCGAGCATGGGAGCTTTCCAAACACCGCAGCGCACGTGCCCAGCGCTCCAAAGCTCTGCATCACCTGCGCCACAGAGAGTTCCAGCAGTGTGTGGAGTGTTTCGAACGCTCTCTACAAATCAACTCCATGCAG
Seq A exon
TTGGGTGTGTGGTTTTCCCTGGGCTGTGCATATTTTGCATTGGAAAGCTACGAAGGAGCCGCCAGAGCTTTTCAAAGATGCGTCGGACTGGAACCAGAT
Seq C2 exon
AATTCAGAAGCTTGGAACAACCTTTCCACGGCCTACATCAAACTGAGAGTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000007918_MULTIEX2-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF132811=DUF4071=PD(55.4=94.7),PF134141=TPR_11=PU(0.1=0.0)
A:
PF134141=TPR_11=FE(47.8=100)
C2:
PF134141=TPR_11=FE(25.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGCATGGGAGCTTTCCAAA
R:
GTAGGCCGTGGAAAGGTTGTT
Band lengths:
168-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]