RnoEX0094696 @ rn6
Exon Skipping
Gene
ENSRNOG00000042932 | Ttc27
Description
tetratricopeptide repeat domain 27 [Source:RGD Symbol;Acc:1305264]
Coordinates
chr6:21763575-21797140:-
Coord C1 exon
chr6:21796913-21797140
Coord A exon
chr6:21771178-21771276
Coord C2 exon
chr6:21763575-21763627
Length
99 bp
Sequences
Splice sites
3' ss Seq
CTGACTTTTGATCTTTGCAGCTT
3' ss Score
9.29
5' ss Seq
GACGTAAGT
5' ss Score
10.93
Exon sequences
Seq C1 exon
GCAGAAGAAATTCTTAGGCAAGAACTGGAGAAGAAGGAAACACCAAGTTTATATTGCTTGCTTGGAGATGTCCTGCAAGATCACTCCTGCTATGACAAGGCCTGGGAGCTGTCCCGACACCGCAGTGCCCGTGCCCAGCGGTCCAAAGCTCTCCTCCATCTTCGGAACAAGGAGTTTCGGGAGTGTGTGGAGTGCTTTGAACGCTCAGTGAAGATTAATCCCATGCAG
Seq A exon
CTTGGGGTCTGGTTTTCTCTAGGCTGTGCCTACTTGGCCTTGGAAGACTATGGTGGCTCAGCGAAGGCATTTCAGCGTTGTGTGACCCTAGAGCCCGAC
Seq C2 exon
AATGCTGAGGCTTGGAACAATTTATCCACTTCCTATATTCGACTGAAACAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000042932-'28-31,'28-30,33-31
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0051523=TPR_1=WD(100=44.7),PF134141=TPR_11=PU(0.1=0.0)
A:
PF134141=TPR_11=FE(47.8=100)
C2:
PF134141=TPR_11=FE(25.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCTGCAAGATCACTCCTGC
R:
AAATTGTTCCAAGCCTCAGCA
Band lengths:
182-281
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]