HsaEX0067887 @ hg38
Exon Skipping
Gene
ENSG00000018699 | TTC27
Description
tetratricopeptide repeat domain 27 [Source:HGNC Symbol;Acc:HGNC:25986]
Coordinates
chr2:32758292-32782678:+
Coord C1 exon
chr2:32758292-32758519
Coord A exon
chr2:32777882-32777980
Coord C2 exon
chr2:32782626-32782678
Length
99 bp
Sequences
Splice sites
3' ss Seq
TTGACTTTTGGTCTTTGCAGCTC
3' ss Score
9.43
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
GCAGAAGAAATCCTTAGACAAGAGCTGGAGAAAAAAGAAACGCCTAGTTTATACTGCTTGCTTGGAGATGTCCTCGGAGACCATTCTTGCTATGACAAGGCCTGGGAGTTGTCCCGGTACCGCAGTGCTCGTGCTCAGCGCTCCAAAGCCCTCCTTCATCTTCGGAACAAGGAGTTTCAAGAGTGTGTAGAGTGCTTCGAACGCTCGGTTAAGATTAATCCCATGCAG
Seq A exon
CTCGGGGTGTGGTTTTCTCTCGGTTGTGCCTATTTGGCCTTGGAAGACTATCAAGGTTCAGCAAAGGCATTTCAGCGCTGTGTGACTCTAGAACCCGAT
Seq C2 exon
AATGCTGAAGCTTGGAACAATTTGTCAACTTCCTATATCCGATTAAAACAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000018699-'42-54,'42-52,44-54
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.027 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF132811=DUF4071=FE(85.4=100),PF0051523=TPR_1=WD(100=44.2)
A:
PF134141=TPR_11=PD(45.6=93.9)
C2:
PF134141=TPR_11=FE(25.4=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGCTATGACAAGGCCTGGG
R:
ACAAATTGTTCCAAGCTTCAGCA
Band lengths:
168-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development