BtaEX6043402 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000033010 | TTC27
Description
tetratricopeptide repeat domain 27 [Source:HGNC Symbol;Acc:HGNC:25986]
Coordinates
chr11:15320961-15345903:+
Coord C1 exon
chr11:15320961-15321188
Coord A exon
chr11:15342046-15342144
Coord C2 exon
chr11:15345851-15345903
Length
99 bp
Sequences
Splice sites
3' ss Seq
TTCGTCTTTTGGTCTTGCAGCTC
3' ss Score
10.11
5' ss Seq
GACGTAAGT
5' ss Score
10.93
Exon sequences
Seq C1 exon
GCAGAAGAAATCCTGAGGCAAGAGCTGGAGAAAAAGGAAACGCCAAGTCTATACTGCTTGCTCGGAGATGTCCTTCGAGACCACTCTTACTATGACCAGGCCTGGGAGTTGTCTCGACACCGCAGTGCTCGAGCCCAGCGCTCCAAAGGCCTCCTCCACCTGCGAAGCAGGGAGTTCAAAGAATGCGTGGAGTGCTTCGAACGCTCTCTGAAGATTAATCCCATGCAG
Seq A exon
CTCGGAGTGTGGTTTTCTCTGGGCTGTGCCTATCTGGCCTTGGAAGACTACGGAGGTTCAGCGAGGGCATTTCAGCGGTGTGTGACTCTGGAACCCGAC
Seq C2 exon
AATGCTGAAGCTTGGAACAATTTATCAACTTCTTATATCCGCTTAAAACAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000033010-'21-24,'21-23,24-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF132811=DUF4071=PD(69.2=97.4),PF0051523=TPR_1=WD(100=44.7),PF134141=TPR_11=PU(0.1=0.0)
A:
PF134141=TPR_11=FE(47.8=100)
C2:
PF134141=TPR_11=FE(25.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACTCTTACTATGACCAGGCC
R:
AATTGTTCCAAGCTTCAGCATT
Band lengths:
170-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]