MmuEX1027210 @ mm10
Exon Skipping
Gene
ENSMUSG00000032307 | Ube2q2
Description
ubiquitin-conjugating enzyme E2Q family member 2 [Source:MGI Symbol;Acc:MGI:2388672]
Coordinates
chr9:55148854-55159919:+
Coord C1 exon
chr9:55148854-55149826
Coord A exon
chr9:55150394-55150401
Coord C2 exon
chr9:55159819-55159919
Length
8 bp
Sequences
Splice sites
3' ss Seq
TGGAACCTTCCACGCGGCAGGTG
3' ss Score
3.86
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
GGGGGCGGCGTCGCTGTTGCCCTTTTAAGCCGCGGGGCCACCGCCTCCTGCGGGTGGAGTCGGTTACAAAGGCAGCAGCCGGCCCGGCTCCCGCACGCTCGCTCGCTCCCTCGCTCGCACGCCCGCCCGCCGAGGCCTCGCGCTCCTCGCCATTTTCCAGCCGCGCTCGGACGCGGGTCGCGGCGGCGGGGAGAGGCGGAGCCGCGAGAGCGCGGCCCGGGCCGGCCCCGCGGGGCGGTCGCGGCCGTGACGGCGGCTCCCGGCCCCGGCTCCCTTTCCTCACCCCTCCCGCTGGAGATGAGGGGAAGATGTCCGTGTCAGGGCTCAAGGCCGAGCTGAAGTTCCTGGCGTCCATCTTCGACAAGAACCACGAGCGATTCCGCATCGTCAGCTGGAAGCTGGACGAGCTGCACTGCCAGTTCCTGGTGCCGCCGCCGCCACCACCGCCGGGCAGCTCGCTTTCGCCGCCGCCGCCGCTCACACTTCACTGCAACATCACG
Seq A exon
GTGGTGTG
Seq C2 exon
CCTGTGAAGAGATTTGGAGCCAGTAAGAAAGAAATACAAAGATAAGCCAACCAGTGCTGGACAGGTACATGGACACCACTACTGACCACTAATCTCTGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032307-'0-4,'0-3,1-4
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.298 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF0577317=RWD=PU(54.3=98.4)
A:
NO
C2:
NA
Main Inclusion Isoform:
ENSMUST00000059555fB19004
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTCACACTTCACTGCAACA
R:
TGTCCATGTACCTGTCCAGCA
Band lengths:
101-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types