RnoEX0095813 @ rn6
Exon Skipping
Gene
ENSRNOG00000014529 | Ube2q2
Description
ubiquitin-conjugating enzyme E2Q family member 2 [Source:MGI Symbol;Acc:MGI:2388672]
Coordinates
chr8:59710543-59721167:+
Coord C1 exon
chr8:59710543-59711737
Coord A exon
chr8:59712308-59712315
Coord C2 exon
chr8:59721036-59721167
Length
8 bp
Sequences
Splice sites
3' ss Seq
TGGAACCTTCCACGCGGCAGGTG
3' ss Score
3.86
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
AGGGAGCACCAGTCTGGTGAGAAGGACCTTTCGGGAGCCACACTTAGAAAAGTGGTGGGTGGTTCAGCGCAGAGCGAGAGCAACAGAGGTGAGGCTGCTAGGTGCGCACCCCTCACCTCCCCATCCGGGCCGCGCCCAGGCCAGGTGAGTGGGTGGCCCGCGGACAACCACGCGGAGGAGCTACCTCCAGGGGCCCGCGCGCTTCCTACCGGAGCCGACGTGCCCCGTGCGATAGGCCGCACACGTGTCTGGCCAGAGGCCCGGGCGCACAGGCGCGCCGGGGGCTCGGGTCCGTCCTCGTGCGCTGCCGCCAGCCCAAATCCTCCGGGTAGCGAGTGCTGGGCGCGGAGCCCCGGCGCGGGGCGGAAGGGGGCTGGGTCATGAGAGGAGGGGGCGGTCGGGAGCGCGCACGGAGCTCGCGGACGCGCGCCGGGGCGGGGGCAGCCCTCTCCCAGGCGGCGGTGGGGGCGGTGTCGCTGTTGCCCTTTTAAGCCGCGGGGCCACCGCCTCCTGCGGGTGGAGTCGGTTACAAAGGCAGCAGCCGGCCCGGCTCCCGCACGCCCGCCCGCACGCCCGCCGAGGCCTCGAGCTCCTCGCCATTTTCCAGCCGCGCTCGGACGCGGGTCGCGGCGGCGGAGGAGGGGGCGGTCGGGAGCGCGCACGGAGCTCGCGGACGCGCGCCGGGGCGGGGGCAGCCCTCTCCCAGGCGGCGGTGGGGGCGGTGTCGCTGTTGCCCTTTTAAGCCGCGGGGCCACCGCCTCCTGCGGGTGGAGTCGGTTACAAAGGCAGCAGCCGGCCCGGCTCCCGCACGCCCGCCCGCACGCCCGCCGAGGCCTCGAGCTCCTCGCCATTTTCCAGCCGCGCTCGGACGCGGGTCGCGGCGGCGGGGAGAGGCGGAGCCGCGAGAGCGCGGCCCCGGCCGGCCCCGCGGGGCGGTCGCGGCCGTGACAGCGGCTCCCGGCCCCGGCTCCCTTTCCTCACCCCTCCCGCCGGAGATGAGGGGAAGATGTCCGTGTCAGGGCTCAAGGCCGAGCTGAAGTTCCTGGCGTCCATCTTCGACAAGAACCACGAGCTATTCCGCATCGTCAGCTGGAAGCTGGACGAGCTGCACTGCCAGTTCCTGGTGCCGCCGCCGCCACCGCCGGGCAGCTCGCATTCGCCGCCGCCGCCGCTCACACTCCACTGCAACATCACG
Seq A exon
GTGGTGTG
Seq C2 exon
TCTGTGAAGCGTTTTGGAGTCATTAAGAAAGAAATGAGAATAAGTCATTAAGAATAAAGTGAGAATAAAAAGATAAACAAGCTAGTGCTGGACAGGGACATGGACATCACTGCTGACCACTGATCTCTGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014529-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.230 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF0577317=RWD=PU(53.9=98.4)
A:
NO
C2:
NA
Main Inclusion Isoform:
ENSRNOT00000019539fB15989
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTGCACTGCCAGTTCC
R:
TGACTCCAAAACGCTTCACAGA
Band lengths:
115-123
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]