MmuEX1028375 @ mm10
Exon Skipping
Gene
ENSMUSG00000094870 | Zfp131
Description
zinc finger protein 131 [Source:MGI Symbol;Acc:MGI:1919715]
Coordinates
chr13:119775767-119782916:-
Coord C1 exon
chr13:119782772-119782916
Coord A exon
chr13:119778433-119778520
Coord C2 exon
chr13:119775767-119776449
Length
88 bp
Sequences
Splice sites
3' ss Seq
TTGTCTTCATCATTACTCAGGAA
3' ss Score
6.82
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
Exon sequences
Seq C1 exon
GTGTTAGTAAAATGGCTTTTCGCCACTTAATTGAGTTCACATACACAGCAAAACTAATGATACAAGGGGAAGAAGAAGCCAATGATGTGTGGAAAGCAGCAGAGTTTCTACAAATGCTGGAAGCTATTAAAGCACTTGAAGTCAG
Seq A exon
GAAGCAGCTGAGAAGAGATGATCCCTTTGTGGGGACAGCTGAACTTGATGACCAACCTGCCTTACTCAGATTTTTGGACAAGGAGGAG
Seq C2 exon
GAACAAAGAAAACTCAGCTCCATTAGAGGAAAACACTACAGGAAAAAATGAGGCAAAAAAAAGAAAGATTGCAGAAACTTCAAATGTTATCACTGAATCATTACCATCTGCAGAATCAGAACCTGTGGAAATTGAGGTGGAGATTGCTGAGGGCACAATTGAAGTAGAAGATGAAGGCATCGAAGCTTTGGAGGAAATGGCTTCTGCCAAGCAGTCTATAAAGTACATACAGAGCACAGGCTCCTCCGATGATTCCGCTCTGGCGTTGTTGGCAGATATCACCAGCAAGTACCGTCAAGGTGAAAGCAAAGGACAGATTAGCGAAGATGACTGTGCATCTGACCCCATAAGCAAACAGGTAGAAGGTATTGAAATTGTGGAACTTCAGCTGTCACATGTGAAGGACTTGTTCCATTGTGAGAAATGTAACCGTTCATTTAAATTGTTTTACCATTTTAAGGAACACATGAAATCACACTCCACTGAGAGTTTCAAGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000094870_MULTIEX1-3/4=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.266
Domain overlap (PFAM):
C1:
PF0065126=BTB=FE(45.3=100)
A:
PF0065126=BTB=PD(2.9=10.0)
C2:
PF0065126=BTB=PD(4.7=2.2),PF121713=zf-C2H2_jaz=WD(100=9.6),PF134651=zf-H2C2_2=PU(38.5=4.4)
Main Inclusion Isoform:
ENSMUST00000177916fB19830
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTGGAAAGCAGCAGAGTT
R:
GGTTCTGATTCTGCAGATGGT
Band lengths:
183-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types