RnoEX0101039 @ rn6
Exon Skipping
Gene
ENSRNOG00000015925 | Zfp131
Description
zinc finger protein 131 [Source:RGD Symbol;Acc:1307638]
Coordinates
chr2:52514222-52521271:-
Coord C1 exon
chr2:52521127-52521271
Coord A exon
chr2:52517015-52517102
Coord C2 exon
chr2:52514222-52514904
Length
88 bp
Sequences
Splice sites
3' ss Seq
TTGTCTTCATCATCACTCAGGAA
3' ss Score
6.75
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
GTGTTAGTAAAATGGCTTTTCGACACTTAATTGAGTTCACATACACAGCAAAGCTAATGATACAAGGGGAAGAAGAAGCCAATGATGTGTGGAAAGCAGCAGAGTTTCTACAAATGCTGGAAGCTATTAAAGCACTTGAAGTCAG
Seq A exon
GAAGCAGCTGAGAAGAGATGATCCCTTTGTGGGGACAGCTGAACTTGATGACCAACCTGCCTTACTCAGATTTTTGGACAAGGAGGAG
Seq C2 exon
GAACAAAGAAAACTCAGCTCCATTAGAGGAAACTACTACAGGAAAAAATGAGGCAAAAAAAAGAAAGATCGCAGAAACTTCCAATGTTATCACCGAGTCCTTGCCATCTGCAGAATCAGAACCTGTGGAAATCGAGGTGGAGATTGCTGAAGGCACAATTGAAGTAGAAGACGAAGGCATTGCAGCTTTGGAGGAAATGGCTTCTGGCAAGCAGTCTATAAAGTACATACAGAGCACAGGCTCCTCCGATGACTCTGCTCTAGCACTGTTGGCAGATATCACCAGCAAGTACCGTCCAGGCGAAAGCAAAGGACAGATTAGCGAAGATGACTGTGCATCTGACCCCATAAGCAAACAGGTAGAAGGTATTGAAATTGTGGAACTTCAGCTGTCACATGTGAAGGACTTGTTCCATTGTGAGAAATGTAACCGTTCGTTTAAATTGTTTTACCATTTTAAGGAACACATGAAATCACACTCCACTGAGAGTTTCAAGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015925_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.290
Domain overlap (PFAM):
C1:
PF0065126=BTB=FE(45.3=100)
A:
PF0065126=BTB=PD(2.9=10.0)
C2:
PF0065126=BTB=PD(4.7=2.2),PF128742=zf-met=WD(100=9.2),PF134651=zf-H2C2_2=PU(38.5=4.4)
Main Inclusion Isoform:
ENSRNOT00000021608fB16871
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTGGAAAGCAGCAGAGTT
R:
AGATGGCAAGGACTCGGTGAT
Band lengths:
169-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]