MmuEX1028377 @ mm10
Exon Skipping
Gene
ENSMUSG00000053985 | Zfp14
Description
zinc finger protein 14 [Source:MGI Symbol;Acc:MGI:99160]
Coordinates
chr7:30050440-30051380:-
Coord C1 exon
chr7:30051345-30051380
Coord A exon
chr7:30050651-30050768
Coord C2 exon
chr7:30050440-30050503
Length
118 bp
Sequences
Splice sites
3' ss Seq
TGTACTCCTTGTTTTTCCAGGCA
3' ss Score
9.95
5' ss Seq
ATAGTAAGC
5' ss Score
5.26
Exon sequences
Seq C1 exon
TCCTTCCGGCTGCTTAGCGCCGGTCCGCTCTGAGAG
Seq A exon
GCATGGGGACATTTACTCCTCATTACTGTGAAAGTGAAAATGAAGTTAGCTTGGAAAGAAGCAGCGGTTTGGTGTTATCTTGGTCAGGGTAGAGGAGACAGATTCATGCAGACTGATA
Seq C2 exon
CAGAAGCCAGGAGAAGGTGTCTGATTCCCAGGAACTGGAGTTATAGACGGTCGTGAAACACCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000053985-'0-1,'0-0,2-1
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCCGGCTGCTTAGCG
R:
TGGTGTTTCACGACCGTCTAT
Band lengths:
98-216
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types