MmuEX1028380 @ mm10
Exon Skipping
Gene
ENSMUSG00000053985 | Zfp14
Description
zinc finger protein 14 [Source:MGI Symbol;Acc:MGI:99160]
Coordinates
chr7:30045739-30051373:-
Coord C1 exon
chr7:30051345-30051373
Coord A exon
chr7:30050217-30050319
Coord C2 exon
chr7:30045739-30045839
Length
103 bp
Sequences
Splice sites
3' ss Seq
TCGTTTTTTACGTATGTGAGTGT
3' ss Score
-7.61
5' ss Seq
CACGTAGGT
5' ss Score
6.85
Exon sequences
Seq C1 exon
GGCTGCTTAGCGCCGGTCCGCTCTGAGAG
Seq A exon
TGTTTCTGTCTGCTTTTCTTTCTGTGCACCACTGAGTGTGACTGCGCCTGAGGAGCCCTGAAGAGGGCATCGGATTCTCTGGAACTGGAGTTACAGCAGTCAC
Seq C2 exon
TGCTGGGGTTCGAACTCAGGCCTTTATGTGTTGAGGCCAGCCCTCTCCCTCTGAGCCTTGTCTCCAGGAGTCTTCTGCTTTGGAGCCTCACGAGGAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000053985_MULTIEX2-2/3=C1-3
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGGTCCGCTCTGAGAG
R:
CCTCGTGAGGCTCCAAAG
Band lengths:
113-216
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types