MmuEX1028493 @ mm10
Exon Skipping
Gene
ENSMUSG00000055341 | Zfp457
Description
zinc finger protein 457 [Source:MGI Symbol;Acc:MGI:2664334]
Coordinates
chr13:67295747-67306412:-
Coord C1 exon
chr13:67306350-67306412
Coord A exon
chr13:67296305-67296431
Coord C2 exon
chr13:67295747-67295842
Length
127 bp
Sequences
Splice sites
3' ss Seq
TACTCTTCTTTTTGCTTCAGGAT
3' ss Score
10
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
Exon sequences
Seq C1 exon
CGCTTCTTCTCAAATTTGTGCAGCTGTCCTGTTGAGCGCTGCATTTGGATTTCTGCCATGGAG
Seq A exon
GATATGTTGTCATTCTGGGATGTGGCAATATATTTCTCTGCAGAGGAGTGGGATTGCCAAGGTCCTGCTCAGTGGGATCTGTACAGGGATGTGACATTGGAGAATTACAGCAACCTTGTGTTCCTGG
Seq C2 exon
GTCTTGCTTCTTCTAAGCCATACCTGGTCACATTTCTGGAACAAATACAAGAGCCTTCAGATGTGAAGAGACAAGCGGCCATCACTGTGCACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055341_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.030
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCTCAAATTTGTGCAGCTGTCC
R:
CTGGGTGCACAGTGATGGC
Band lengths:
154-281
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types