MmuEX1028510 @ mm10
Exon Skipping
Gene
ENSMUSG00000044452 | Zfp507
Description
zinc finger protein 507 [Source:MGI Symbol;Acc:MGI:1916378]
Coordinates
chr7:35791648-35795618:-
Coord C1 exon
chr7:35795296-35795618
Coord A exon
chr7:35794057-35794637
Coord C2 exon
chr7:35791648-35791762
Length
581 bp
Sequences
Splice sites
3' ss Seq
ACCGTCTTCATCTCCTTTAGAAC
3' ss Score
9.99
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
ATATGGAAGAAAGCAGCAGCATTGCCATGTTGGTGCAAGAGATTGGAGAACCGGAGGCTGTGTTAACTGCTGAAGGAGTCCTCAGCCCTTCCTCAGAAGTTGACCAACAAAGAAAAGCTAAAGCAGATCCATTGGTCCACGTTATCCAGAAGCTAAGCAAGATAGTGGGGCATGAGAAGTCACAAAAATGTCTACTGATTGGGAAAAAGCGCCCACGTCCAAGTGAGACAGCAAACTCTCTTGAAAAGCTAGAGAACTGTGAGATTCCAGCTAAAGCCACTGAGTCCCCTGCTGCTGGGGTTAGGAAAACCGAGATGTCACAG
Seq A exon
AACAAAGCACAGAGGAGGGAGTACACCTAAACCAGGCAGTCACGCTGGACGCTAACGAGGAAGAAATGCTGGAGGTGATGTCTGATTCCGAGGAGAATCTCTTTGCTGATAGTTTGCTATCTTCAGCACAGAAAATCATTAGCAGTAGCCCAAACAAAAAAGGTCACGTGAATGTCATTGTGGAACGTTTGCCAAGTGCTGAAGAAACCCTCCCACCAAAACATTTCCTCATTAATGCCGAAATGGAAGAGGGGAAGAGCCCGAGCCCCTCCGAAGCCCAGACTGGGTGTGTAGGAGCAGGAAATATGTACCATGCTGATAAATGTACTGTTGATATTGGGGGGTTGATCATCGGCTGGAGCAGTGCAGAGAAGAAAGACAGTGAGCTAAGTAAGGGCCTGGCTCCTGATGAGAATGCCCCACCAGGACGGAGAAGGACAAATTCTGAGTCTCTCAGGCTGCACTCCTTAGCTGCAGAAGCCCTTGTCACCATGCCGATAAGAGCTGCTGAACTAACAAGAGCCAGCCTTGGGCACTATGGGGACATAAACCTTTTAGATCCAGACACTGGACAAAGGCAG
Seq C2 exon
AGCCAACTGAGGAATCATGAGAGAGAGCAGCACTGCCTGCCCAACACCTTGTCAGTAGCTTCGAATGAGCCAAGAATTTCCCGTGATGCCGCTGATGGAAAGTGTGCTCAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044452_MULTIEX1-4/4=3-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.493 A=1.000 C2=0.323
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSMUST00000205670fB19924
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCTCAGCCCTTCCTCAGAA
R:
TGAGCACACTTTCCATCAGCG
Band lengths:
356-937
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types