MmuEX1028570 @ mm10
Exon Skipping
Gene
ENSMUSG00000066880 | Zfp617
Description
zinc finger protein 617 [Source:MGI Symbol;Acc:MGI:2684459]
Coordinates
chr8:71928202-71934629:+
Coord C1 exon
chr8:71928202-71928328
Coord A exon
chr8:71929138-71929198
Coord C2 exon
chr8:71932019-71934629
Length
61 bp
Sequences
Splice sites
3' ss Seq
TTTTCTGGGTCTACTTTTAGGAC
3' ss Score
10.01
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
GAGTCAGTGACTTTTGAGGATGTGGCTGTGAACTTCACCCTGGAGGAGTGGACTTTGCTGAATCCTTCACAGGAAAATCTTTACAGAGCGGTGATGAGAGAAACCATCAGGAACCTGCATGATATAG
Seq A exon
GACAGAAATTGGGAGAACAGAACACTGAAAATGCATACAAAAATCCTGGGGGAAATCTAAG
Seq C2 exon
ATACCAAGTGGTAGAGAAGCTTTGTGAGTATGAAGAAGATAGTCAATGGGAAGAAATCTTCAGTGAGATTCCAGATCCTGTGGTGAGCCAGAAAACTGGAGAAAAGCCCTGTGAAAGCCATGTGTATGGAGAAGATATCACTGGTCATTCATCTCTAAATGTGTCCCTCAGAGGTCAGACTAGATGCAAAACACATGAGTATAAAGAACACGGAGAGAAGCCATGTAAATGTAAAGACAGTGGAGTGGCTTTTGGTTCTCCCCAGAGCTTTCTGAAGCATGAACAAATTTACACACAAGAGAAACCCTATGCCTGTAAACAGTGTGACAAAGCCTTTAAGTATCTCAGTTCTCTTCAAAATCATAAAAGGATCCATAATAGAGAAAGAAACCATGCGTGTAAACAATGTGGGAAATCTTTTAAGAGACAGAGTAATGTTCAAGCCCATGAGAGAAATCACACTGGAGAGAAACCCTATGTGTGTAAGCACTGTGGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000066880_CASSETTE1
Average complexity
S*
Mappability confidence:
50%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.093 A=0.762 C2=0.083
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCGGTGATGAGAGAAACCA
R:
TTCTGGCTCACCACAGGATCT
Band lengths:
135-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types