RnoEX0000536 @ rn6
Exon Skipping
Gene
NA
Description
NA
Coordinates
chr16:19582692-19587019:-
Coord C1 exon
chr16:19586987-19587019
Coord A exon
chr16:19586124-19586184
Coord C2 exon
chr16:19582692-19583384
Length
61 bp
Sequences
Splice sites
3' ss Seq
TTTTCTGGGTCTGCTTTTAGGAC
3' ss Score
10.5
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
TGAGAGAAACCATCAGGAACCTGCATGATATAG
Seq A exon
GACAGAAATTGGGAGAACAGAACTCTGAAAATGCATACAAAAGTCCTGGGGGAAATCGAAG
Seq C2 exon
ATATCAAGTGGTAGAGAAGCTCTGTGAGTATGAAGAAGATAGTCAATGGGAGGAAATCTTCAGTGAGATTCCGGATCCTGTGAGCCAGAAAACGGGGAAGAACCCCTGTGGAAGCCATGTGTGTGGAGAAGGCACCTGTGGAAGCCATGTGTGTGGAGAAGGCACCTGTGGAAGCCATGTGTGTGGAGAAGGCACCTGTGGAAGCCATGTGTGTGGAGGAGGCACCACTGGTCATTCATCTCTGAATGTGTCCTTTGGAGGTCAGACTAGATGCAAAACACATGCGTATAAAGAACAAGGAGAGAAGCCATGTAAATATAAAGACGATGGAGTGGCTTTTGGTTCCCCCCAAAGCTTTCTGAAGCATGAACAGTTTTACGCACAAGAGAAACCCTATGTCTGTAAACAGTGTGATAAAGCCTTTAAGTATCTCAGTTCTCTTCAGAATCATAAAAGAACCCATACTAGGGAAAGAAACTATGCATGTAAACAATGTGGGA
VastDB Features
Vast-tools module Information
Secondary ID
Rn.190856_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAACCATCAGGAACCTGCA
R:
GTTCTTCCCCGTTTTCTGGCT
Band lengths:
132-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]