MmuEX1028608 @ mm10
Exon Skipping
Gene
ENSMUSG00000049728 | Zfp668
Description
zinc finger protein 668 [Source:MGI Symbol;Acc:MGI:2442943]
Coordinates
chr7:127867756-127876828:-
Coord C1 exon
chr7:127876047-127876828
Coord A exon
chr7:127873773-127873927
Coord C2 exon
chr7:127867756-127868424
Length
155 bp
Sequences
Splice sites
3' ss Seq
AGTGAAACTTTGTCTCAAAGCTA
3' ss Score
2.06
5' ss Seq
AAGGTAGAC
5' ss Score
7.07
Exon sequences
Seq C1 exon
TCACAGGAAAGACCCTGCAGCCCCGGCTACGGCGCTTTGGTGACACTTTTCACGAGGTTCCATAAAAGCTTCTTCCCAGGGCTGGCGTGGAGGGATCCTCGCTGAGTCCTTTCCTCGCTGTTAGAGGAAATGTGGACTCGACGTGGACGCGGGCACCACAAAGCCCGAGCGCCCTCTCCGCATCGTCCCACCTCCTAGCTCCTGCAGACGCTTCCGGCGACTTGGCGGGTGTCCGCCGTCAATCAGCCCGGCGTGCCAGCCCCTCAGCACCCAGAAACCCTTCGCAAGATACTTCTCTGCTTCCGCAGGCTCGGGGCTGCTTCCCTAAGTTTTTCCTTCCTCCCGAGCAAGGAAGGCGGCCTTCCACTTCCGCCGTCTGCCCGGCGGCCCCTCCCCGCCCTCCCTCCGGGTCCTAGCGCCTGCCCCTCTCCGACTGTCCCGAGCTCCGTCGGCGCCAGGCACCGCCGCCAAAGCTGCGGAGCCTGCGAAAACCGATCCAG
Seq A exon
CTAGAAATTGCAAACAGTGCCACGAAGAAAGACATAGAGCCAAAGTACAGGATTCACAGCTGTAATCCCTACACTGAGGGGGTTAAGGCAGGAAGAAGAATCAAGGCCAGCCTGAGCTACATAGTAAGATCCTGCACACCCCCTCCAACAACAAG
Seq C2 exon
AGAAGGCCTACTCACCAAGGCCATGGAAGTGGAGGCTACAGAGGCCAGGTCCCCAGGCCCCTGCTACAAGCGCTCTGGCCGCCGTTATAAGTGCCTGTTTTGTACAAAGACATTTCCAAATGCACCCAGGGCAGCCCGCCATGCTGCTACACATACACCCACAGACTGCACAGAGGAGGTGAGGGAGGCCCAGCCAAAAGTGGATACAGAGCCCAAGGCGGAGGAAGCCAGCGGAGACAAGGTATCAGCTTCAGTAGCCAAGCCCCGGCCCTATGCCTGCCCACTGTGCCCCAAGGCCTACAAGACAGCTCCTGAGCTACGCAGCCATGGGCGCAGCCACACTGGTGAGAAACCCTTCCCGTGCCCAGAGTGTGGCCGCCGCTTCATGCAGCCAGTGTGCCTGCGTGTGCACCTGGCCTCACATGCCGGTGAGCTGCCCTTCCGATGCACACACTGCCCCAAGGCTTATGGTACACTCTCTAAACTAAAGATCCACCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049728_MULTIEX1-2/3=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.292
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=11.1),PF134651=zf-H2C2_2=WD(100=11.6),PF134651=zf-H2C2_2=WD(100=12.0),PF134651=zf-H2C2_2=WD(100=12.0),PF134651=zf-H2C2_2=PU(23.1=2.8)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCTCCCGAGCAAGGAAGG
R:
CACTTATAACGGCGGCCAGAG
Band lengths:
258-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types