MmuINT0179690 @ mm10
Intron Retention
Gene
ENSMUSG00000049728 | Zfp668
Description
zinc finger protein 668 [Source:MGI Symbol;Acc:MGI:2442943]
Coordinates
chr7:127867756-127876828:-
Coord C1 exon
chr7:127876047-127876828
Coord A exon
chr7:127868425-127876046
Coord C2 exon
chr7:127867756-127868424
Length
7622 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
TAATTTTGCTTCTTTTGCAGAGA
3' ss Score
8.63
Exon sequences
Seq C1 exon
GCTTCCGGCGCTAGGTTCCGGGTGGGCCCGACTGTTTGTTTTCTTTTTGTTGTTTTGAGACTGGGTCTAACTCTGCAGCCCGGGCCGGCCTCGAGCTCGGAGCAATCCTCCTGCCTCAATTTCCAGAATGCTGGAGCTCCCAGGCAGCGTGAGCCCCCACGCTCCGCTGCGGGCGCAGCTCTGGCTCCGCCCACGCAGGTCGGCGCGGCGTTCGGATGGATTTAAGCCACACTTCCGTCCAGAGCTGCTGAAACCCTTCGCGTGCTTATTCGGGCAGTACGGTCACAGGAAAGACCCTGCAGCCCCGGCTACGGCGCTTTGGTGACACTTTTCACGAGGTTCCATAAAAGCTTCTTCCCAGGGCTGGCGTGGAGGGATCCTCGCTGAGTCCTTTCCTCGCTGTTAGAGGAAATGTGGACTCGACGTGGACGCGGGCACCACAAAGCCCGAGCGCCCTCTCCGCATCGTCCCACCTCCTAGCTCCTGCAGACGCTTCCGGCGACTTGGCGGGTGTCCGCCGTCAATCAGCCCGGCGTGCCAGCCCCTCAGCACCCAGAAACCCTTCGCAAGATACTTCTCTGCTTCCGCAGGCTCGGGGCTGCTTCCCTAAGTTTTTCCTTCCTCCCGAGCAAGGAAGGCGGCCTTCCACTTCCGCCGTCTGCCCGGCGGCCCCTCCCCGCCCTCCCTCCGGGTCCTAGCGCCTGCCCCTCTCCGACTGTCCCGAGCTCCGTCGGCGCCAGGCACCGCCGCCAAAGCTGCGGAGCCTGCGAAAACCGATCCAG
Seq A exon
GTAGGACACGCCGGCGGGAAGTCGCGGGGGCTCGGGCAGCGGCCCCCGACGCGGTTTGGGGTGCTCCCGGCTTCACGTGTGCTGCCGAGCGGACGGAGTTGACCAGGCGCGAGCATCCCGGGCGGGGCGAGCCGTGAGCGGCCTCGGGCGGGCTGCGGGCCCAGCAGGTCCTAGAACCCGCCCGGTGCCCGCCGGTCAGTGCTTTGGATGCCCAGGCTCAGCGGACGCGACTGCCGGCCCTGCTCGGCGCGGACCCGGGGGTCCTAGAGTCCGCCATGTTCCGGGCTTTTGTCTGAGTGGCGAGGGCCTCGTCGCCGAGTCCTTGGCGGCTGCGCCCCCCCTCCCAGTCCGAGGTTCTGCCCGCCCCTCCCGCGGTCCTAAAGAACGCCATTTTGCAGGTCTTTGTCCTGCTCTGAATCCTCCGTCCATTCATTTCTTCATGCCTTCCTTCTTCATTCATTCTGCCCTGTTCCGCTCGCCGAAGCTACGTTATCCTAGGGTTTAGTCCCAAATGAGTCAGCATACAGCCCCGCTCTGCGGGGGCTGCCTGTCTGGCGAGGACACCCGCACAAACACGGTTGCAGAGAGCGAGGAGCGCTGGGTTTCTGCAGGTCTTGTCCCTCCTCAGAGAGTCTGGTAGGCCCTACTGCCCTGCAAACTCCCGTATGCTGTTCCACTATTCCACTGAAGAAATTGAGTCCCCGAGCGCGATGCATCCCTCATCTTACAGCTCGTTATTATTTTTGTGGGGAATGGAGTATTGGAAGCATGCAAGTATCTTCCCATGGGAGAAGGAAAAGGAGGGACAAAGGGAATTGCATATGGAGGTGGTAAAGTTTGTGAATTGTTGATGGAGCTTTGGTTGCTGACCAGAGTGGACGCTGCTACAGAATCTGAGGGTGGAAAAATGGGATCATGTGAGCTGACTGGTTGTTAGGCCTAGGATATCATTAAACATTCACCACAACACAGTTTCATCAAAAGGCTCAAGGTTTGGGAGGCTTATATGTTGACCTATTTGAGGATTATATCTAGATGCCTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACCACACCTGCGCTGCTCCCTCAAACCCAGCTTTGGGGACACTGAGTCTCATTAACGTGTGAGAAATTAAAATGTCATCTCTCTTACTGGGTTTCATCACAACAGTAAACAAATTGGAGTACTAGGGTGATACTTGAACCATGTGACCTTGTAAAAAACGGGGCATTTAAGTTAATAAATAGTTGGTGACTGACTCTCACAAACTCCTACAGTGGAAGAGGCAGAGGCTATAGACCTGGGTGTGAATTCCACCAGAAGTTTGCTCTCAGTCACCAAACAGTTTTGGAGTAACAGGTGCGTAGAACAAAGTTCCCTGGACCCGATTGCTGGAGGTGAAAAATTAAGAACCAAATAATAACATATGCTAGTGCTACAATAGTCAAGGGGACAGATGGCAGAAATGTCCATATCTGACTACTTGGCTTCAAATACCAGCTAAGTCTGTGGTAATTGCCTGGCTTTTCTGTGTTATCTCTTATATCTCGTGTGTTTTTGTAGCACATGTGTGGAGGTCAGAGAACAACTTACTGGAATTGGTTCTGTCTTTCCATCATGTGGGTCCTGAGGATACAACTCAGCCTCGACAGAAAACGCCTTTACCTACTGGGGCATCTTGGGTTCTTGTTCTTGCCCCAAGAACAGGAACCTAACCTTCCGGCCTGAAGCTCTCCCCTTAGGGCTTTATTGAACCTTAATTACTGCTGAAAAGACCTTGTTAGCAAACACAGTCTTGGTGCGGCTAGAGCTTCAACATAAGAATTTTAGAAGACAGATACTCAGCTATAACAGGCTTCTAAGGCATCAGGACATGAACTTAAGTCAAAGAAGTCAGTTAAGTGTGCATAAAATACACATGATGTGTAATCCATGGCAGGAAGCCGGCACCTTAAAAGAAAAGGTTTTTGAAGTTAAAATGTAGTTAGGATAAACATCTCATTATCTGAAAGGAGTATATGAGGTGTGGTGGTGCACATAGTAACATTATAACACTCAGGTGAGAGTTCCAGGCCAGCTGAGGCTAATAGTGAAACTTTGTCTCAAAGCTAGAAATTGCAAACAGTGCCACGAAGAAAGACATAGAGCCAAAGTACAGGATTCACAGCTGTAATCCCTACACTGAGGGGGTTAAGGCAGGAAGAAGAATCAAGGCCAGCCTGAGCTACATAGTAAGATCCTGCACACCCCCTCCAACAACAAGGTAGACAAGAAAACCTTCATTATTTTTTATGTATATGAGTGTTATGCTTACATGTATGTATGTGTACCAAGTGTATGCCTGATGCTTACATGTATGTATGTGTACCAAGTGTATGCCTGATGCTTACATGTATGTATGTGTACCAAGTGTATGCCTGATGCTTACATGTATGTATGTGTACCAAGTGTATGCCTGATGCTTACATGTATGTATGTGTACCAAGTGTATGCCTGATGCTTACATGTATGTATGTGTACCAAGTGTATGCCTGATGCCTGTAAATGGGAGTTGTAGGTGTTTGTGAGCCACCTTGTGGGTAATAGGAACCGAATCTGTGTCCTCTGGAACAAGAACAATTGCTCCTAACTACTGTGCCATCTCTCCAGCACCCAGGAAGGCCTTCTTAGAGGGAGGGAGATAACCAAGCTTGGTGACCTGAGTTTAGCCTCCTAGAGCCATCTAGTAACAGGAGAGAACTGACTGTGCAAGCTGTCCTCTGCCCTCGACACCCTCTAGTGAGTGTGCATACACATAAACAAAGAGAGGAAATACAGTCTTTAAAGAAAAAAAAGAAAGACAGCCTTATAGAGGAAGTGTGTGGGAGCAAGACCCAAGTAACCAACGAGTTAAATACAGAGATACAGAGGTCAGGAGACTGAGGGGTAGCAGTTTCCACTGTAGAACTGCTAGTATAAATGACTAGCATGGAAGGAACTGAAGTCTAGAACGAAGACAGGAGGCCTGGAGGTGTGGAGCCTTGCAGTGGAAGTGAGGGATGGGACAGAGCTGAGCAGGAGAGAGATGGGTTAGAGAGAAGTACTGATCTTTGTCCTGGGAAGTGTCCTGATTTTGCTGAAGAATTTTAAGTGAGCAAAGAGTGATTGTATAGAGTCCTGCTCCAGCTCTAGGGTTGGAAGAGCTGAGCTTTGACTTTGGGCATCTTAATTAGCTGTGGACTCTTCTGCCTTGTGAGGTTTTTTTTTTTGTTTTGTTTTGTTTGTTTTTTTTTTTTTCTGGTTTTTGAGACAGGGTTTCTCTGTGTAGTCCTGGCTGCCCTGGAACTCACTTTGTAGACCAGGCTGGCCTTGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGACTAAAGGCGTGCGCCACCACCGCCCGGCCCTTGTGAGGATTTTTATATAGAGTTGTAGTAAAAATGATTCCTCCTAGAAGTACTTGAAGATCTAAAAAATGTGTTCTCTCTCTTTCTCTTTGTTTCTTTCTTTTGTTTGTGTTTCTGAGAGTAGAACCCAGTGCCGCACACTGTCAGGCAAGTACTTTCCCCTTTTATATCCTGGCTCACGTACCTAGTTCTTACATGTTAGTTGGAATGGTGAGAGTTTGTTTAACGTACCAGTTTCAGGGTTGCAGAGATGGTTTGGCCTGTTAAAACACTAGCCATACAAACCTGACAACCTGAGTTCAAGCCCCCAAACCGAGGCAAAAGCTAAATTTGGTGGTACACATCTGTAATCGAGCACTGCTATAGGGAGATGTACTACAGAGGCTTGTCAACAAACTAGCCTGGATTACACAGTGTAGCAACAGTAAGAGACCCCACCCACCTCAACAAGTTGGAAAACAAGCTGACTCCCAGTTGTCCTCTGCATACCTACATACATACAAATAAATATGCTTGGTGCCACACACCTATAGTCCTAGCACTGGGGAGGCTAAGGCAGGTGGACCTCTGAGTTTGAGAACACCAGGGCTATAGAGAAACCCTGTCTTGAAAAACCAGAAGAAAATAAAAGAAAGGAGGAGGAGAAAAGGACTAGGGTGTGGCAACAGTGGGGTTGGGGAGTGTCCAGTCCACTGGAGCCTAACCACTGTGAGCTGTCTAGCATGGGTGTGCGAACTGGATTCATAGCCTCCAGTCCAGTGCTTCTCAACTTCCTAACGCTGCTGCCCTTTAATACAATTCTTCATGGTGCAGTGACCCCACTACTTCCTAACTGTAATTTGCTACTGCTATGAATTCTAATATAACTACTGTGTTTTCGGATGTTCTTAGGTGACTCCTGTCAAAGCCATTGGAGACCCACTGGTTGAGCACCATTGTTCTAGAAGACCAGTGGGTGCTCTGCTCGGCAATCTCTCTGGCCTGTGACTTTTTTTTTCTTTTTTTCTTTCTTTTTTTTTTTTGGTTTTTCGAGACAGGGTTTCTCTGTATAGCTCTGGCTGTCCTAGAACTCACTCTGTAGACCAGGCTGCCCTTGAACTCAGAAATTCGCCTGCCTCTGCCTCTCAAGTGCTGGGATTAAAGGTGTGCGCCACCATGCCCGGCATGTGACTTGTTTTAAAAGATTTATTTATTTATTATATGTGAGTACACTGCAGCTGTCTTCAGACACTCCAGAAGAGGACATCGGATCTCATTACAGATGGTTGTGAGTTTTGAACTCACCTGGCTGCTGGGATTTGAACTCAGGACCTTCAGAAGAGCAGTCTGTGCTCTTAACCACTGAGACATCTCTCCGACCTCTGCCCTTTTTTTTTTTTTTTTTTTTTTAAAGAATAAAAATATGATGGGCAGAGGCCAGAGGATTTCTGCGTTCGAGGCCAGCCTGGCCTATAGAGTGAGTTCCTGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCAACACCCCACCCACCCAAAAAAAAAAAAAATAATAAAATAAAAATATAACAACAAAAGTAAAAATACAGATTGCAGTGTCCATGTCACCTTCATTAGATGATGGTTCTTTTTGTTTGCTTTTTACAAAAGGGTTGGTTTTTGTTTTTGTTTTGTTTTGTTTTTTAATCTTTATTTGTGTTTGGACTCGTCCACAAATGCCCAAGGGGCCAGAAGCTAGATCCATGTGAGCTGAAGTTGCAGGTAGTTGTGAGCCACTCAGTGTGGGTGCTGGGAACTGGACTCAGGCCCTCTGGAAGAGCAGCAAGTCTCTTAAGTACAGCGCCATCTCTCCAACCACTTGTTATTTTTATTAAATTAGGACCTTGCTCTGTAGTCCAGGCTGGCTTGGAGCTAAAGAGCATCCTGCCTAAGACTCAGAAGAATTAGGGTCGAGAGTATGCTTCTAGGAGTCCACTGTTGCTGTCTGAAGACACTCCAGAAGAGGGCATCAGATCCCATTACAGATGGTTGTGAGCCACCTTGTGGTTGCTGGGAATTGAAATCAGGAACTCTCAAAGAGCAGTCAGTGCTCTTAACTGTGGAGCCATCTCTCCAGTCTGGTCCCAGACTTCTGAGCAAGAGCTCAAAAACTTTAAACCCCAGAGTTAAGGCTCAGCCATGTTAAGTTTCTAGCCGTATGACTTGACAAGTCTCTTTACTCTCAGAACTCAACTCGCTCTCATCTATAAAATGAGGTCAGGGCTTCCAATTTTAGGCTGTGTGAGAATCATGCCAGGTGCCACACCCAGCTGATGACTTCTGATAAGACTCCATAGTTGAGGGAAGCAGTCTGATTCCATTCGGTCCTCACACAGCCCCATGTGTTAGTGCTTTGTTACCTCAACTTTGCAGAGGAGAAAACTGAGGTTCTAAGATACACAGTAAATTGAACAAAAAGTCACATCAGCTGGGAAGTGGTAGGGGCTGGATTTGAAGCTGATGGTTTGCCTTCAGAATATACTGGGTTGCACAGAACTCTGTATACTGACAGATAGATGTAAAAAGGTTAGGATGCTGTGGGACTTGGCAAGTACTTAGTGGATGTGAGCTGTCCTAGGGATGAACCAAGCAGAGCCTCATGCGTGCTATTGAAGAACATTGTTGCTGGCCTACACTCCCAGCCTGGCTTTTGTTTTGCTTTGCTTTGTTTCTTTTGGGGAAATTTAGGAAGCTAGAGATGTGACTCAGTGGTAGAACACTTATCTGGCCTGTATTAGGCCCTGGGTTCAAATCTTACTCTCCTACCCCACCCCACCTCCCTTCCCAATGCTTCCTGGTATGGTGCTGACTCTACAGAGCCTTTCAGGGGCTCCATTGGTCAGCCAGGTAAACTGCTTCTATAATTACCTTCTCTGGAATAGGCCCCAACCCCACCACCACCCCACCCTCATCCTCTTGGATGGGCTCCATCCTCCTTCTCCACCCCAGCTCCTGTGGTGTACAGATGAGGACACTGGTCTGTAAACAGAGCCTAGTCAGTGATGTACAAGTCTGAACACAACCTGGCCTGCCACCCTCTGGGCACACCTGGCTCTCCTTGCCCACTCTCCCCTGCCCCAGCACCACATCTAAGCTTCTCTTAAGAGGATCTACCCTAATCCTCTTCCCTTCATCTCTCTGGGAGGATGAGCGGGTGTTAAGACTGATGCAGCTGTTAATCCTATTTTTTCCCAACTATGATCCTAGGAGCAGCTGTGTGGATGTTGTCTGGGCTCTTGGCCAGAAAGTAGGGACTCAGCAAGAGCTAGTATCCCAGGAGGCCTCGCTAACTCAGACACATCAGTTGTAACTGAGGAAGAGGCTCGGACTGTCAGCAGTAGGTCAGGCTGCCTTAAGAGTGAGTGAGCTCCTACCAGAGTTTTAGAGCTGGGACTAAAAGGGACTCCACTAAAAGGGACTCCAGTGCAGAGGATGGACCAAAATTCCTATCTGGGGTGGTGTGCCTTATAGCTATGAATGGTCAGAATTCTCTGAGCAGTTGCTCCTCCAGAACTGGGCCAACATACAGTGGAGACCCATTACCTCCAAAAATAGCCATCCACCCTGCCTAAACATTGGTTCCTCCTTTCTCTGGAGCAAGTCTGTCTTTCCCGAGCATTTGGAGATCTTAGGCCGTGGGTAAAAAGGAAAGGAACATTGTGAGGGTAGTGGAACCTAGGCATTATAGGAACGCCAAGGGTTTAGAAAACGGGTTAAAGGGCAGACAGGGCTGGTCCTTCTGTGATGCTGGCCCTCACTGCTTTCTACCCCTAATGAGAAGATCACAGGGGAGACTTGAATGCAGTACCAAAGGTGGGCTTCATTAGTAGGAAGGATGTAGAGGTCCTGTGGCTTGGGCTGAGGAACATGGGGGTGGGGGGAGTATGGGTGTCATCCAGTTACCTTTGTGACTGCAGAGATGGCTCAGTGGTTAGAGTACTTGCTGTCCTTGCAGAATATTCAGGTTTAATTCCCAGCACCGACATGGTAGCTCACAGCCTTAGGCACTAAGCATAGGCATGGGCCAGTAAACATTCATACATGGAAAATGAAAGTGATATTTTCCTTAAAGGTAGGGTCACCTCTGAGATATTGAGAAGGCTTTGGTGAAGAGGGGAGCCTTGAAGAATACAGAGGGATGGTTTTGGTCTAATTTTGCTTCTTTTGCAG
Seq C2 exon
AGAAGGCCTACTCACCAAGGCCATGGAAGTGGAGGCTACAGAGGCCAGGTCCCCAGGCCCCTGCTACAAGCGCTCTGGCCGCCGTTATAAGTGCCTGTTTTGTACAAAGACATTTCCAAATGCACCCAGGGCAGCCCGCCATGCTGCTACACATACACCCACAGACTGCACAGAGGAGGTGAGGGAGGCCCAGCCAAAAGTGGATACAGAGCCCAAGGCGGAGGAAGCCAGCGGAGACAAGGTATCAGCTTCAGTAGCCAAGCCCCGGCCCTATGCCTGCCCACTGTGCCCCAAGGCCTACAAGACAGCTCCTGAGCTACGCAGCCATGGGCGCAGCCACACTGGTGAGAAACCCTTCCCGTGCCCAGAGTGTGGCCGCCGCTTCATGCAGCCAGTGTGCCTGCGTGTGCACCTGGCCTCACATGCCGGTGAGCTGCCCTTCCGATGCACACACTGCCCCAAGGCTTATGGTACACTCTCTAAACTAAAGATCCACCAGCGTGGGCACACAGGTGAGCGGCCCTATGCCTGTCCTGACTGCGGCAAGAGCTTTGCTGATCCTTCAGTGTTCCGCAAGCATCGGCGCACCCATGCCGGCCTTCGACCCTACAGCTGCGAGCGCTGCGGCAAGGCCTATGCTGAGCTCAAGGACTTACGCAACCATGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049728:ENSMUST00000054415:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.292
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=11.1),PF134651=zf-H2C2_2=WD(100=11.6),PF134651=zf-H2C2_2=WD(100=12.0),PF134651=zf-H2C2_2=WD(100=12.0),PF134651=zf-H2C2_2=PU(23.1=2.8)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types