BtaINT0165942 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006650 | ZNF668
Description
Bos taurus zinc finger protein 668 (ZNF668), mRNA. [Source:RefSeq mRNA;Acc:NM_001076953]
Coordinates
chr25:27433762-27440674:-
Coord C1 exon
chr25:27440577-27440674
Coord A exon
chr25:27434431-27440576
Coord C2 exon
chr25:27433762-27434430
Length
6146 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
3' ss Seq
TAACTTTGCTTCTCTTGCAGAGA
3' ss Score
9.62
Exon sequences
Seq C1 exon
GCTGGGTCCTAGCGCCTGCCCCTCCCTGGCAGAGTCCTGGGCTCTGTCGGTGAGAGGAGCTGCAGCTGACGCCACGGAGCCAGCCCAACTCTCTTGAG
Seq A exon
GTAGGAAACGCCGGCGGGAAGATGCAGAGATCCCTGGGCAGCCCCAGTGGGGACGGAATCCGAGCAGGCCTCAGTTTCCCTTTGGGTGCCTAGGGCGGATGGGGTTGGCCTGGCCCGAGCGGTGCGGGCGGGGCGGGAGGAGTGCGGCCCGGGGAGGGCGCGGACGGGCTCCAGGCCCAGCGGGTCCTAGAACCCGCCGGCTGTCCCGGCGGACCGGCAGCGGCAGACGCCTGGGCTTAGGCGGCACGGCTGCCCGCGTAGTGCCGTGCGGACCCGAGGGTCCTAGAGCCCGCCATGTTGCGGGCTTTTGTCCCAGGCGCGCAGCCCGCCTAGCATGGTCCCTGGCGCCGGCGGCCCCCCCGCCCCGGTCGAGGTCCTGGCCGCCCCTCCCGCGGTCCTAGAGAACGCCATCTTGCAGGCCTTTGTCCAGGGTCTGGCCTTCGGTCCATTCATTTGTTCATTCTGTCATTCTTCGTTCACCTTTTTGCTGTGTTCCCCGGGGCCACGTTTTCCCAGGGCATTTCCTGAGAAGAGCGAGCCCAGGGCCCTGCCATGTGGGGTTGTCTGTCTGGCAGAGGCGCCGACACGTAGACAGTTGCAGGGAGCAAGAAGCGCAGGGTTTCCGCAGTTCTTGGCTCTAACGCCCTTAAAAGTCCCACATGCCTTAGAGACCCCATTTTACCGATGAGGAAACTGAGGCCCAGAGCGCCATGGCGCTCTTACCTCTACTGCCTGTTAAGTCTTCCTGAGGACATTGGGGAAGCAGGTATTTGACGAATGCAAAAAGAGCTTTCCCACTGGAGAAAGCAGAGGGAACTGCAGATGGAGATGGATTTAGGTGGGGAAGTTTGAGAATTGTAGCTGGAGCTGAGGTCGCTGTCGGGAGGGGCACACTGCCGCTAGAGGTGAGGCCGGAAAAGTGGGTTGGGATTACCTTGTGGATTGACCAGATTGGATGCCTAGGAGACGATTAGCTCTCATCTCTGCGTGGTTCACAGTTCCCCATCTGCCATCTCACCGGATCCCTCATGGCCTGTGAGGCCTTTTGGTGACTACTTGTTTAGACGTCTGGAGACTGAGGTCTGAGAACATTAAAAAAGTGGCTCTTCACTGTCCCTGCCCGCAGGGTTCTAGCTTAAACTCGGAATTAAATCTCTGGATCCCTGGAGATAAGAGTCTGTTCAGGCAGCAGGAAGTCATCCCCCTCCTAAATCCAGTAGTAAACAAAGATAAGGCTCCCACACCAGAGCAGTGAATCCACTGGGATATTTGGACCTTGTGAACTTGGAAAGGCAGAGAAATTCAGTACAAACTCCTGTTATTGGGGAGGTGGAAGCTAGAGACCTGGGTTCAGATACTGTCTCAGAGGTTGATCTGTTCAGTTTGTTTTGGGGCACCAAGCATGGTTCTATTTGTAGAGGATACAAAATAAAGGTACCTAGCTCTGTGCCAGCCTAAATGCTTGCGCTAGAGACAGAGAATTAACAACTGAACCATAAGATGTGTAAGTGCTAGCGAAGCAATAATCAGGGGACAGAGCAGAAGTTTGGGAGGCAGACCTGGCTTTGAGTATGGGCTGTGACCATGACTTATTACTTCCCTTCCCTGTGCCTCAGTATCCTTGTCTGTAAAATGGGGGAAAATGGGGAAAACACTACTTAACGTAGTCTGTTCAGTATATAACAGACTGTTATATATAACAGACTATATATATATAACAGTATATATAACAGTATATAACAGACTGTTATATAACAGACTACCAAGTCTGACAGTAACCAAAACAAACAAACAAATGATAGCAGACTGGGGGCACAATGGAAGTTTATTTCTCATGGTTCTGGAGGTTTAGGTGTCTGAGATCAAGGTGCTGGCTGATTCAGATCCTGGTGAGACCTCCTTTCTAGGATTATATATGTGACCACCTTCTAAGTTCTCACATGACCCTTTCTTCCATGCCTGCACATATTCATTCATAACAAACTCCTAGGCAGTTGTGAAGCTTAGCTTGAGTAGTACACATAAAATGCTTAGAATGATACCTGGCCCTTGGTAAATTTGCCAGAAATGTTATCCAGATGAACAACACGAAGGAGATTAAAGAGGAGGGGAACAAAGAGTGATTAGCAGGGATGCAGATAGCACTAAGAAAGGTGGTCAGGGACTTCCCTGGTGGCTAAGACTGTCCTCCCAATGCAGGGGATCTGGGTTCGATCCCTGGTCGGGGAACTGGATTCCACATGCCGCAGCTAAGAGTGCAAATGCCACAACTAAAGATCCTGCACGCCACATATAACACCTGGTGCAGCCAAGTAAACTTAAAAAAAAAAATTTTTTTTAAGTGTCAGGAAAACCCTCTCTAAGGAGGTGACAGGGAGCTGAGACCCAAATGGAATCAAAGAGATAGCTACACAAAGATCCTTGGGGAATAGTGTTTCTAGCAGTGGACATGGTTAGTGTGAAGTCCCTGATATTGGAAGGAATTTAGGTCTTTGAGGGTGGAAAAGGGGGAACCTGTGTAGTTGGAGCCTAGTAAGCCAAGGAGAGGGGAGTGGGAGATGGGATAGGCAGGACTTAGGTAGTTAAGGGCCTTGCTGGCCATGGTCTTTGTCTTGGGAGCCCTGGAAGGTCTCATGGTTTGGCTAATAAACCTTAAGTAAATGAAGAACACTAGAGAAAGAGCCCAGCCCAGTTCAGTTCAGTTCAGTCGCTCAGTTGTGTCTGACTCTTTGCGACCCCATGGACTGCAGCCTGCCAGGCCTCCCTGTCCATCACCAACTCCCAGAGTTTACTCAGACTCATGTCCATTGAGTTGGTGATGCCATCCCACCATCTCATCCTCTGTCATCCCCTTCTCCTGCCTTCAATCTTTCCCAGCATCAAGGTCTTTTCAAATGAGTCAGCCCTTTGCATCAGGTTCGAAGAAGAGCAGAGAAAGAGCCAGCCCAGGGACCTGCAGATTTGGGTTTGAGTCTGGGCTCCTTGACTAGCTATGTGTCATTGGGTAAGTTTTTTCGCTTATGGAGGCCTTAATCTCCACATCTGGGGAAAAAAAAATGTTAAAAATGCCTCTCTCCTGGAAGCTTCTGAAGATCCATGGATGTGTCCTTGGTTCTTAAATGTTAAATGTTAGTTGGGATGACATAGAAAACATGTTTAGAATAGGTTTATGAATCCTACCCCACGTTCCCTGGATGATTATTCTCATGCAGGGAGCTCGTAGAGTCATCACTGTAGGGAGTGGTGGGTGGAAGAGTCCTCTGAACAGGGAAGTGAGGAGCTGATGGTGGGGTTTTAGACAGGGCCTAGCCTACCTGGCTGTGCACTGTTGCTGGAGCTGATGTCTTCTGGAACTTGCCTGGTGCTCCCCTCCCATTTTCCCTGGGAAGTGCCTTAGGACAGGTTTACCCCTCCAGCTACCTGGTTCCTGGCTGAGAGGGGGAGATTGAGGCTCAAAGCTCAGAACCCCCAGGTCCAGCCCTCTGAGAGGGAGACAGAAACATAATGGGAGCTGGCTCTGGTCTCCAGGCAATTCTACTGGGATGTGAAAAGACCAAGGTGTAACCTGAGCTCAGAGTTCTGGTCCCCACAGGGTTGGCCCAAGCAGCAGACAAGTCTGGGAGGGTCCAACAACCCAAGGCAAATTAAAACACCTGGATTTCAAGTCTGCTGCATGAGTTATTAGCTATGTGATCATGGGTTAATCACTAACCTTCTTGGAACCTCAATTTTGTTTTTAATAAATTTTATTTATTTATTATTTTTGGCTGTGCTGGGTCTTTGTTGCTGTGCACTGGCTTTCTCCAGTTGCGGCAACTGGGGGCTACTCTCTAGTTGCGGTGCTCGGGCTTCTCATTGAGGTGGCTTCTCTTGTTGCAGGGCACAGGATCAATAGCTGTGGCGCACGGGCTTAGTTGATCTGAGCATGTGGGATCCTCCCAGGTTGGGGATCGAACCCATGTCCCCTGCATTGGCAGGTGGATTCTTAACCACTGGACCACAGGGAAGTCTAGAACCTCAGTTTATTCGTCTGTAAAATGAGAATAAATAATCCTGATCTCAGAAAGCTATGAGAGAATAAGGTAGCACATGCAGCAAAGTGTCTGGCTCTGATAAGATTCAGTAATTGAGGGTAGTAATTATTATCTCATTGAGCCCTGCCCAACCCTGTGAAGTAAGTCCCCTCTTTTTTCAGATGAGAAAAATTGAGGTCCTGGAGCAGGAAGTACATTGCTCAGGGTCAATGTACAGCTAGGAAGCGAGCAAGCGAAGATTCAAAGCCAAGCAGTTTGACTTCAGAGACTGCACTTAACCACAAAGCTACATTGTTTTTCTGGACCTCAGTCCCTTATCTGAGAAAGAAGGGTAATGATAGAACTTATCTCCTGGTGCCCATGTGAAGTTCAAATGAGTTAATGCATGTAAAGAGTTTAGGATATTGTTTGTTATTTAGCAGGCGCTCTGTACATGTGAGCTCTTATTTTTATTAAGGAGAGTGTTCAGATTGTCCAGAAATGATCGGGAAGGGAGGTTGTGAGAGCCTCATCCAAGGATAAGCAGTTCCCCTAAAAACTGTAGGTGGGATTCAGCACTGGGGAAGGTGGGGCCTCAAGCCCTTAACTCACCTTCCAGTCCTAGGATTTAGTGGGGAAAGTATGAAAACCAAGCTGGGGTGGAACAGAGCTATGTAGGATGGGGGCCAAAAACCAAGGGGAGATGTAGGATGAGCTTCCTTTGGGGAGTAAGGCTCCAAAAGGAAGGATTGGTGAGATCCATAACAGCCAGGAAGGACCCGGGAACTTGTGTGGTGTGATGAAAGCCATGGGAAGTTCCTGAGTAGGGGACCGAGCATTACATGGCACCTTAGGGAGAAGACTCTGGCTGCCTGTGCACACTAGACTGTGTATGTAGGGGACAGGAACTGAGGCAGGGCCACTAGGCAGAAGGATGCTGATTCTAAAGATGCACCCCTTGCCACTCACCCTCAGGGACTCCTGCATCCTCCCTGAGTCATAAATTAAAGCCACCAATCCATGAGGTATACGGATGAGGAAACAGGCCCAGAAAGGAGAATCCTGACCTCCCACCTCCCGGTCCACCTTCTGGGCACACCTGACTCCCCTCCCCTCTCCATAGCATTGTCCTCCTCACCTCACCCCCCACCCTGGCTGCCCCCAGCAGCTGCTGCAAGCACTCCTTAAGTGGATCTGCTATAATCCTCTTCCCTTCATCCCCCAGGGAGGATGAGCTGGTGTTAAGACTAATGTAGCCATTAATCCTATTTCCTCCCATCCATGATCCCAGGAGCAGTTGGGTGGAGGGTGTCTGGACTCTGAATGGAAAGAAAAGGGGCTGTGACTACAGCCGGGTGTCCCAGGGGGCCAGGCTAGAGCAGATACATTGAGTAGGAGACAGAGGCTTCTAAGTTCTGCTAGCAATGACTCAAGCCACTTGGAGAGTGTCTGAGCTCCCCATTACCAGAGTTATGGGAGCAAGAACCAAAGGGCCATTCCAGAACAGAGGGTGGACCAGGATTCCTATCTGGGGTGGAGTATCTTACAGCTGTGCAAGGCCAGAATTCTGTGTGAACAGTTGTTCCCTCAGAGAGCTAACCAACCAGAAGGGAAAGACAAAATACACATGCTGGGGACCTACCCTTCCAGACAGATGATGCCAGTCACCACATTTAGCCCGCTGGCTCTGCCCTCCTCTGGATCCTTGTCTGTCTTTCCTGAGCACTTAGAGACCTTCAGGCCAGACTCACATCTGGGTAGCCTCCATGCCTGCAGCCTGGCACAGGTTTGGACGCTGAGGTCAAGAACGTGAAGATGGTGAGATGGACCAAGCCTGGGGCTTCTCGGAATGCCACAGGGCTTGGAGAAGCCCAGAAGCTGGGGAGAGAAGTGCCAGTGAACATTTGGATGATCCCAGCTTCCCCCCTCAGCTCCTCTGAAGTCACCTAGTCCAGCCCCTTTCATCAGTGAACGGACCAGAGGGGCAACAGGAGCACAGAGACAGAAAGGATATGCACCCGGGTGGGACATGCAGATAAGAGTTCCTTCTGAGGCCTCAGAGGGCTTTGGTGAGGAGAGAGCCTTTGGAGAATTCGGAAAGGGGTGTGGCTCCTAACTTTGCTTCTCTTGCAG
Seq C2 exon
AGAAGATCCGCCCATCGAGGCCATGGAGGTAGAGTCTCCGGAGGAGCGGTCCCCAGCCCCGGGCTACAAGCGCTCTGGCCGCCGCTATAAGTGCCTGTCCTGTACCAAGACTTTTCCAAATGCACCCCGGGCAGCACGCCATGCTGCCACGCACGGGCTTGCAGACTGCACTGAGGAGATGGCCGAAGCGAAGCTGAAGCCAGAGACAGACCCCAAAGCGGAAGATGCCAGCGGGGACAAGGTGTCAGGTGCAGCGGCCAAGCCTCGGCCCTATGCTTGCCCGCTGTGCCCCAAGGCCTACAAAACAGCACCAGAGCTGCGCAGCCACGGGCGCAGCCACACGGGCGAGAAGCCCTTCCCTTGCCCCGAATGCGGCCGCCGCTTCATGCAACCGGTGTGCCTGCGCGTGCACCTGGCCTCGCACGCTGGCGAGCTGCCCTTCCGCTGTGCGCACTGCCCCAAGGCCTACGGCGCGCTCTCCAAGCTAAAGATCCACCAGCGTGGTCACACGGGCGAGAGGCCCTACACCTGCGCCGACTGTGGCAAGAGCTTCGCTGACCCCTCGGTGTTCCGCAAACACCGGCGCACGCACGCAGGCCTGCGACCCTACAGCTGCGAGCGCTGTGGCAAGGCCTATGCAGAACTCAAGGACCTTCGCAACCATGAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006650:ENSBTAT00000008736:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.306
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=11.1),PF134651=zf-H2C2_2=WD(100=11.1),PF134651=zf-H2C2_2=WD(100=12.0),PF134651=zf-H2C2_2=WD(100=12.0),PF134651=zf-H2C2_2=PU(23.1=2.8)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]