RnoINT0168568 @ rn6
Intron Retention
Gene
ENSRNOG00000016683 | Zfp668
Description
zinc finger protein 668 [Source:RGD Symbol;Acc:1308623]
Coordinates
chr1:199313613-199320727:-
Coord C1 exon
chr1:199320348-199320727
Coord A exon
chr1:199314282-199320347
Coord C2 exon
chr1:199313613-199314281
Length
6066 bp
Sequences
Splice sites
5' ss Seq
CAAGTATCC
5' ss Score
0.52
3' ss Seq
TAATTTTGCTTCTTTTACAGAGA
3' ss Score
8.08
Exon sequences
Seq C1 exon
GCCTTTGTCCTGTTCTGGATCCTCTGTCCATTCATTTCTTCAGTCCTTCCTTCTTCATTCATTCTGTCCTGTTCCGCTCGCCGAAGCCACGTTATCCTAGGGTTTAGTCCCAAATGAGTCAGCATACAGCCCCGCTCTGCGGGAGCTGCCTGTCTGGCGAGGACACCCGCACAAACACGGTTGCAGAGAGCGAGGAACGCTGGGTTTCTGCAGGTCTTGTCCCTCCTCAGAGAGTCTGGTAGGCCCTACACCCTGCAAAATCCCATATGCTTCAGGGACTCCATTCCACTGAAGAAATTGAGGCCCCTAGCTCTACGCATCCCTCATTTTTACTGCTCGTTAAATATTCTTGTGGGGAATGGAGTATTGGAAGCATGCAA
Seq A exon
GTATCCTCCCGTGGGAGAAGGAAAACGAGGGCTGGCTCCTGGGCAAAGGAAATTGCATATGGAGGTGGCAAAGTTTGTGAATTGTTGATGGAGCTTAGACTCCTGACCAGAGAGGACACTGCTGTAGAAACTGAGGGTGGAAAAATGGGATCATGTTGTGAGCTGACTGGTTGTTAGGCCTAGGACATCATTAAACGTTCACCACAACACAATTTCATCAATTCACCGAAAGGCTCAAGGTTTGTGGGGCTTGTATGTTGGCTTATTTGAAGCTTGTATGTAGGTGCCTTTCTTATTGTTTCAACCACACCTGTGCTGCTCCCCAAACCACCCCGATTTAGGGGGCACCGAGTCTCATTAACTTAAAGTAAGATATCATTCTCCTCATTGGGTTTTATCACACAGTAAACAAATTGGAGTACTAGTGTGATACTTGAACCCTGTGACCGTGTAAGAACGGGGCATTTCAGTTAAATAGTTGGTGACTGACTCTCACAGACTCCTATGGTGGAAGAGGCAGAGGCTATAGACCTCGGCGTGAATTCCACCAGTTTGCTTTTGGTCACCAGTTTTGGAATAACAAGGGTATAGAACAAAGTTCTCAGGACCCTAGTGCTGGAGGTGAAAAATTAAGGCCCAAATATTAAAATGTGCTAGTGCTAATAAAGCAGTCGTCAAGGGGACAGATGGCAGAAACTTTGGTATCTGACTACTTGGCTTCAAATACCAGCTGAGGTAATTGCCTGACTTGTGTTATCTCTTATTTTAAGACCATGTTTAGTATTTTATCTTGTGTGTACTTGTAGCACATGTGTGGAGATGAGAGAACAACTTATTGGGATTGGTTCTGTCTTTCCACCATGTGGTTCCTGAGGATCCAGTTCAGGTTGTCAGGCTTGACAGAAAACACCTTTACCCACTGGGGTATCATGCTAGCTCAAGAACACTAATCTAACCTTACAGCCCAAAGCTCTACTCTTATGGCTTTATTTAACCTTAATTACTTCTGAAAAGACCTGGTTTCCAAACATAGTCACAGGGGAGGTTAGAGCTTCAACATAAGAATTTTAGAAGAAGACAAATATTCAGACTTTTAAGCATCCGGAGATGAACTTGAAAAGTCAGATCAGTGTGCATAAACTACAAATGTTATCTGTTCCCAGCAGTCCACAGCAGTAAGCCTGCATGTAGGATTTGCTCCAGATGGCACCGTAAAAAAAAGTTCTCTGAAGTTAAAGGTAGTTAGGATAAACATATCATTATCTAAAAGGAGTCTATGAGGTGTGGTGGTGCACAGGTAAAATCCTAGCACTCAGGAGACAGGCAGACTTCTGCAGTTCCAGGCCAGCTAAGGTTATAGTGAAACTTTCTCTCAAAGCTAGAAATTCTAAGCAGGGCCACAAAGGAAGGAATGTAGATCAGAGCCAAAGTACAGGATTCACACCTGTAAGCCCAACACTGAGGAGGCTAAGGCAGGAAGAATCAGGGCCAGCCTGAGCTGCATAGTCAGATCCCGCACACCCCACTCCCCAAAAAGGTAAACAAGAAAACTATTATTTTTTGTGTATGAGTGTTATGCTTACATATATGTGTGTGCACCAAGTGTATGCCTGATGTCTGTAACTGGAGTTGTAGGTGTCTGTGAGCCACCATGTGGGTAATAGGAACCAAATCTGTGTCCTCTGGAACAAGAGCAATTGCTCTCAACTGCTGTGCCATCTCTCCAGTACCCAGAAAGGCCTTAAGAGAGAGGGAGAGGGCCAAGCTCAATGATCTGAGTTTAGCCTTCTAGAGCCATATAGTAATAAGAGAATTGACTCCTGCATGCTATCCTCAGCCCTCCACACAACCCCTAGTGAGTATTATACACAAACACAAAGAGAGGAAATAAAATTTTTAAAGAAAAAAAGAAAGACAGCTCTAATAGAGGAGTGTGTGGGAGCAAGACCCAAAGTAACCAAGGAATCAATACAGACAGACAAAGATCCTCAGGAGACTGAAGGTAGCAGTTCTGAGGCTAGAAATGCTAGTGTAAGTGACCTGAAGTTGGAAAGAACGGAGGTCTAGAATGAAGACAGGAGGCCTGGGCAGGCGGAGCCTAGAGATGGAAGTGAGGAATTAGACAGAGCGGCAGGAGTGATATGGGTTAGAGGTTTGTCATTCATAGAAAAGCACTAGTGTTTGTCCTGGGAAGTGTCCTGATTTTGCTGAAGAATTTTAAGTGAACAAAGAGTGAACTTAAGAGTCCAGCTCCAGGGTTTAAGATTTGAGTTTGACTCTGGGCATCTTAATTAGCTGTGTACGCGTTTGTGAGGATTTTTAACTAGAGTTGTAGTAAAAACATATTTTAAAATAGAGTTGTAGTAAAAATGTTTCCCTCCTAGAAGCACTTGAAGACCAAGGAGAGAGAGAGAGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTTCCTGCCCTCCTCTTTGTTTGTTTCTTTGTTTCTTTTGTTTGTGGTACTGAGAGTAGAACAGTGTATCACTCTTGTCAGGCAGGTGCTTTCTCTCTATCCTGGCTCACATAGCTGGTTCTGGTATTGGTTAGAATGGTCAGAGTTTGTTTAAAGTACAGATTTCAGGGTTGCAGAGATGGTTTGTGGAGTTAAAACACTCGCCATGTAAACCTGACAAGCTGAGTTTAAGCCCCAGAACCCAGGAAAAAGCTAGATTTGGTGGCCCAGGTCTGTAATCCAGCACTGCTATAGGGAGATGGAGTGCAGAGACAGGAGAATGACCTGGGAGCTTGTCAACAGGCTAGGCTGGGGTACATAGTGTAGCAACAGGAAAAAGTGAGAGAGACCTTACCTCAAGTTGAAAAACAAGAACTGACTCCTAGTTGTCCCCTGCATACCTACACACACACAAATATGCTTGGTGCTACACACCTAAGTCCTAGCACTGGGGAGGCTAAGGCAGGTGGACCTCTGAGTTCAAGGACAGCCAGGGCTACAGAAAAACCCAGTCTTAGAAAACCAAAAAAAAAGGGGGGGGGAGGAAGGAATGGGGTTGGGGACTGACTGATCCACTGGAGCGTGGCCATTGTGAGCTGTCTAACATGGGTGGGAGGAACTGAATTCATAGCCTCTACACCAGTGGTTCCCAGCTTCCTAATGTTGCGGTCACTTAATACAGCTCTTCATGTTGTGGTGACCCCCAACCATAAGATTATGTTTGTGGCTATGTCATAACAGTAGTTTGCTACTTGTTGTGAATTATGATGTCAATATCTATGTCTTAGAGGGCCTTAGGTAACTCTTGAGAAAGAGCTGTTGGAGACCCACTGGTTGAGAACCATTGTTCCAGACCAGTGAGTGCGATGCCTGGCAATCTCTCTGGCCTATGACTTTTTTTTTTTAAGAATAAAAATACAAAAAAAAAAAAAAAAAAAAGTAAGAATACAGCAGTGTCCTACATCGACTCCATTAGATGATGGTTCTTTTTGTTTACTTTTTTAAAAAGGATTTTTTTTCTTTTAATTTTTCGTTTGTGTTTGGACTCCATAGATGCCCAAGGAGCCAGAAGAGGGTATCAGATCCCTATGAGCTGAAGTTACAAGTGGTTGTGAGCCACACAGTGTGGTTGCTGGGAACTGGACTCGGGTCCTCTGGAAGAGCAGCAAGGCTCTTAACTACAGAGCCATCTCTCCAGCCATTCGTTTTTGTTATTTATGTTAGGACCTTGCTGTATAGTCCGGGCTGGCTTTGAACTAATGATCATCCTTCCTGAGACTCCACCAGTATTAGGGTTATAGGTGTGCTTCCTAGGAGCACACTGTAGCTCTCTTCAGACACTCTAGAGTCATCTCTCCAGTCTGGTCCCAGACTTCTGAGCAAAGACTCAAAAACACCAGCATCTCAGCCATGTTAAGTTTCTAGCTGTGTGACCTGACAAGTCTCTTTACTCTCGGAGTCCGACTCATTCTTATCTATAAAGCGGAGTCAGTCTCCCCGTTTCAGGCTGTATGAGAATTATGCAAGATGGTGCCACACCCAGCTGGTCAGCTCTGACAAGACTCCATAGTTGAGAGAAGCAGTCTGATCCCTTCCGTCCTCACGCAGTCCCATGTGCTAGCACTGTTGTTACCTCAACTCTGTAGGCAAGAAAACTGAGGCTCTAAGATACACAATAAATTGAGCAAAAAGTTACATCAGCAGGAAGGCGTGGCGGGAAGGGGTGGCAGCTAGATTTGAAGCGGGATGGTTTGCCTTCAGAATATACTTGGTTGCACACAACTCTGCTTCTCGGAACCTTGCTTTCTTGTGGTGTTGATGTAAGGATGTGTTGATATATGTAAAAAGGGTAGGGTACTGTGGGATTTGGCAAGTACTTAGCAGCTGTGAGCTAGGGATGCATGCCCGTCAAGAACTTCGTTGCTGGGCTACATTCCCCAGCATAGCTTTTGTTTTTGTTTTTTTTTCCTTTGGGGGAAATTTAGGAGGTTAGAGATGTGACTCAGTGGTAAAACACTTATCTGGCCTGTACCAGGCCCTGGGTTCAAATCTCACTCTTCCACCCCGTCCCCCAAATGGTTCCTGGTGTGGTGCGGACTCTACAGAACCTTTCAGGGGCTCCACTGACCAGGTAAACTGCTCTGTGTTACCTTTTCGGGAAGGCCCCAGCACCCCACCCCCATCCTCTTGGATAGGCTGGCTCCATCCCCCTCCACCCCAGCTCCTGTGATGTACGGATGAGGACACAGTTCTGTAAACAGATCTAGTAAGTGATGTACAAGTCTGAACTCAGAACCTTGGCCTGACACCATCTGGGCACACCTGCCTCTCCTCACCCACTCTCCCCTGCCCTAGCACCATATCTAAGCTTCTCTTAAGAGGATCTACCCTAATCCTCTTCCCTTCATCCCTCTGGGAGGATGAGCGGGTGTTAAGACTGATGCAGCTGTTAATCCTATTTTTTCCCAACTATGATCCTAGGAGCAGCTGTGTGGATGTTGTCTGGGCTCTTGGCCAGAAAGTAGAGCCTCTGCAAGAGCCAGTACCCCAGGAGGCCTCCCTAGCTCAGACACATCAGTTGTGACTGACTGAAGAGGCTCGACTGTCAGCAGTAGGTCAGGCTGCTTTGAGAGTGAGTGAGCTACTTTAGAGCTGGGACCAAAAGGGATTCCAGTGCAGAGGACGGACCAGAATTCCTCTCTGGGGTGGTGTGCCTTATAGCTATGCATGGTCAGAATTCTCTGAGCAAGTTGCTCTTCCAAGAACTGACCAACATACACTGAAGACCCATTACCTGCAAACACACCCAACCACCCCGTCCAACATTGACTCCTCCTTTCTTTGGACCTAGGTCTGCCTTTCCTGAGCATTTGGAGATCTTAAGGCCGCGGGTGGACCTGAGAAAGGAATATTGTGAGAGTAATGGAACCTAGGTATTGTAGGAATGCCAAGGGTTTAGAAAACAGGCTAAGGAGTGGATATAGCCAGTCTTTTTGTGATGCTGGCCCCTCACTGATTCCTACCCCCAATGAGCAAATCACAGGGAAGACTTGAATGCAGTATTAAAGCTGGGGACTGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAACTGCAAGGCCCTGGGTTCGTTCCCCAGCTCCGAAAAAAAGAAAAAGAAAAAAAAAAAAAAAAAAAAGCTGGGGACCTTTAGCAGGGAAGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCCAGGCATGGATGGGCATGAGCCAGTAAACACTCACATGTAAAGTGACAGTAATAGTTTTCTTAAAGATAGGGTCACCTCTGAGATCTTGAGAGGGCTTTGGTGAAGAAGGGGCCCTTGAAGAATGTAGAGGGATGGTTTTGGCCTAATTTTGCTTCTTTTACAG
Seq C2 exon
AGAAGGTCTACTCACCGAGGCCATGGAAGTGGAGGCTGCAGAGGCCAAGTCCCCAGGCCCCTGCTACAAGCGCTCTGGCCGCCGTTATAAGTGCCTGTTTTGTACAAAGACATTTCCAAATGCTCCCAGGGCAGCCCGCCATGCTGCTACACATACAACTACAGACTGCACAGAGGAGGTGAATGAGGTCCAGCCGAAGGTGGATGCAGAGCCCAAGGCTGAGGAAGCCAGTGGAGACAAGGTATCTGGGTCAGTAGCCAAGCCCCGGCCCTATGCTTGCCCTCTGTGCCCCAAGGCCTACAAGACAGCTCCTGAGCTACGCAGCCATGGACGCAGCCACACTGGTGAGAAGCCCTTCCCGTGCCCAGAGTGCGGCCGCCGTTTCATGCAGCCAGTGTGCCTGCGTGTGCACCTGGCCTCACACGCTGGTGAGCTGCCTTTCCGATGCACACACTGCCCCAAGGCTTATGGTACACTCTCTAAACTAAAGATCCACCAGCGTGGGCACACAGGCGAGCGGCCCTATGCCTGTACTGACTGCGGCAAGAGCTTTGCTGATCCTTCAGTGTTCCGCAAGCATCGGCGCACGCATGCAGGCCTGCGCCCCTACAGCTGCGAGCGCTGCGGCAAGGCCTATGCTGAGCTGAAGGACTTACGCAACCACGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016683:ENSRNOT00000022452:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.269
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=11.1),PF134651=zf-H2C2_2=WD(100=11.6),PF134651=zf-H2C2_2=WD(100=12.0),PF134651=zf-H2C2_2=WD(100=12.0),PF134651=zf-H2C2_2=PU(23.1=2.8)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]