MmuEX1028624 @ mm10
Exon Skipping
Gene
ENSMUSG00000048897 | Zfp710
Description
zinc finger protein 710 [Source:MGI Symbol;Acc:MGI:1921747]
Coordinates
chr7:80024814-80082540:+
Coord C1 exon
chr7:80024814-80024986
Coord A exon
chr7:80074258-80074399
Coord C2 exon
chr7:80081049-80082540
Length
142 bp
Sequences
Splice sites
3' ss Seq
TGGATCCCCTGGAACTGAAGTTA
3' ss Score
-2.47
5' ss Seq
GAAGTTAGT
5' ss Score
2.87
Exon sequences
Seq C1 exon
GGAGGAAGGAGGGAAGGGGAAGGAAGAGCGCAGGGAGGGGAGAGGATCCAGGCTTCCCTTCAGCTCGGTGACCTGGTCCGGAGCCACAGCTTCCCTCGCTTTGTCTGGGCCCGCCGAGACCTCACGTTTCTCGCCCAGCTGCAGCCCCAGTCCAAGGGCCAGGCATCCAGCAG
Seq A exon
TTACAGACAGTTGCGAGCCATCTTGAGGTGTTGGGAATGAAGGGTCCTTGGAAGAGCAGCTGCTACTGTTACCCGCTGAGCCATCGCCAGCCCCCATTCATTCTTTCTTGACGTCTGGGTAACGCTCCATCCTGACAGAGAA
Seq C2 exon
AAATGCCCTCGTAGCCAGACGCCACGGGATGGAGGGCTTCATGGACTCAGGGACACAGACCGACGCTGTGGTGGTGCTGTCCTTGGCTCAGGCGGCTGTGCTGGGCCTGGTCTCAGAAAATGAGCTCTTCGGAGCCACCATAAGTGCTGAGGCCTTCTATCCAGACCTAGGGCCAGAATTGACTGGGACAGCCATGGGGGAGCCAGGACCGCCAGGGCCGGACATCTATCAGCTGGCCTGTAATGGACGAGCCCTGGAAGAGCCCCCGGAAGAGGAGGTGCTGGAGGTAGAGGCGGCCTTTGAGAAGCACACGCGGAGGAAGACACGGCCCCCTGTGAGGCTGGTACCCAAGGTCAAGTTTGAGAAGGCAGAAGAGGAAGAGGAACAGGAGGTGTATGAGGTGTCTGTGCCTGGTGATGACAAAGACCCGGGCCCTGCAGAGGCCCCAGCCGAGGTGGCCAGCAGCGGCTGCGAGGCCCTGGTGCAGAGCAGTGCCGTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048897_MULTIEX1-1/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.430
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=PU(36.0=1.8)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGATCCAGGCTTCCCTTC
R:
CATTTTCTGAGACCAGGCCCA
Band lengths:
255-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types