MmuEX1028625 @ mm10
Exon Skipping
Gene
ENSMUSG00000048897 | Zfp710
Description
zinc finger protein 710 [Source:MGI Symbol;Acc:MGI:1921747]
Coordinates
chr7:80024814-80082540:+
Coord C1 exon
chr7:80024814-80024986
Coord A exon
chr7:80075188-80075263
Coord C2 exon
chr7:80081049-80082540
Length
76 bp
Sequences
Splice sites
3' ss Seq
GGAACTTGCTTCTCTTTCAGGCT
3' ss Score
7.53
5' ss Seq
GAGGTCTGA
5' ss Score
2.68
Exon sequences
Seq C1 exon
GGAGGAAGGAGGGAAGGGGAAGGAAGAGCGCAGGGAGGGGAGAGGATCCAGGCTTCCCTTCAGCTCGGTGACCTGGTCCGGAGCCACAGCTTCCCTCGCTTTGTCTGGGCCCGCCGAGACCTCACGTTTCTCGCCCAGCTGCAGCCCCAGTCCAAGGGCCAGGCATCCAGCAG
Seq A exon
GCTACCTGGACTGCCCCACCCTGGGGCCTGCCTCTCCTCCCAGTATCACAGCTGACGCCAGAGCCATATTTTGGAG
Seq C2 exon
AAATGCCCTCGTAGCCAGACGCCACGGGATGGAGGGCTTCATGGACTCAGGGACACAGACCGACGCTGTGGTGGTGCTGTCCTTGGCTCAGGCGGCTGTGCTGGGCCTGGTCTCAGAAAATGAGCTCTTCGGAGCCACCATAAGTGCTGAGGCCTTCTATCCAGACCTAGGGCCAGAATTGACTGGGACAGCCATGGGGGAGCCAGGACCGCCAGGGCCGGACATCTATCAGCTGGCCTGTAATGGACGAGCCCTGGAAGAGCCCCCGGAAGAGGAGGTGCTGGAGGTAGAGGCGGCCTTTGAGAAGCACACGCGGAGGAAGACACGGCCCCCTGTGAGGCTGGTACCCAAGGTCAAGTTTGAGAAGGCAGAAGAGGAAGAGGAACAGGAGGTGTATGAGGTGTCTGTGCCTGGTGATGACAAAGACCCGGGCCCTGCAGAGGCCCCAGCCGAGGTGGCCAGCAGCGGCTGCGAGGCCCTGGTGCAGAGCAGTGCCGTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048897_MULTIEX1-2/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.430
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=PU(36.0=1.8)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGATCCAGGCTTCCCTTC
R:
TGAGTCCATGAAGCCCTCCAT
Band lengths:
182-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types