MmuEX1028642 @ mm10
Exon Skipping
Gene
ENSMUSG00000057396 | Zfp759
Description
zinc finger protein 759 [Source:MGI Symbol;Acc:MGI:2446280]
Coordinates
chr13:67124971-67127000:+
Coord C1 exon
chr13:67124971-67125091
Coord A exon
chr13:67126212-67126352
Coord C2 exon
chr13:67126952-67127000
Length
141 bp
Sequences
Splice sites
3' ss Seq
CTCTTTGATCAAATCTTCAGGTT
3' ss Score
6.82
5' ss Seq
TAGGTAGGT
5' ss Score
7.92
Exon sequences
Seq C1 exon
TAGAAATTAATTTTATGGAGAGGAATGAAGGAAGTATGTGGATGTATTATGAAGTCATGCGGTGATGTTCAGTGATCAACTACTATGAAGTCACCATTTGTTATATAATCTGCTGGCCAAG
Seq A exon
GTTGTGACTATACCACGGTAGCTACTCCCCCTATTGAATTACACAGGCAAAATGCAAAGAAATGGAGACAGTAGAAGAGTCGTGACTCTATGCTGTATCCTCAAGGATGAGCGCATCTCCTATGAATGACTACTCTCTTAG
Seq C2 exon
CATTCAGGAGGAGGACAGACCAGTCATGACACTTGCCAATCAAGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057396_MULTIEX1-2/3=1-3
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTTATGGAGAGGAATGAAGGAAGT
R:
TGATTGGCAAGTGTCATGACTGG
Band lengths:
154-295
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types