MmuEX1028643 @ mm10
Exon Skipping
Gene
ENSMUSG00000057396 | Zfp759
Description
zinc finger protein 759 [Source:MGI Symbol;Acc:MGI:2446280]
Coordinates
chr13:67121217-67136844:+
Coord C1 exon
chr13:67121217-67121782
Coord A exon
chr13:67126952-67127000
Coord C2 exon
chr13:67136718-67136844
Length
49 bp
Sequences
Splice sites
3' ss Seq
GTCAATGCCCTTCACTGCAGCAT
3' ss Score
6.47
5' ss Seq
CAGGTACAT
5' ss Score
7.79
Exon sequences
Seq C1 exon
CTCTCACCTGTTTGGATGTGTTCTCCTGTATTTCTTTAAGGGGGTTATTTATGCCCTTCTTATAGTCCTCCATCATCATCATGAAATGGTGTATCCAGGACTTGCTATGGTGGGAGAGTTTGGTTCTGATGATGCCAGGTTACCTTGGTTTCTGTTGCTTCTGTTCTTATGATTACTCCCACCATCTGATTATCTCAAGTGCTCCCTGACCTCAATATATCTGATTGGTGCCTGTCCTTTCTGTAAACTCAGTTGAGTCAGAACTTCTCAGAGTCCAACTTTCTTTGTGATCCTGTGATTCTGGAATCCTGTGATGCTGAGATTCTGTGTGTGTCAGAGTTCTTGGCAGTTAAACTTCCTCTGAGACCCTGAGATCCTGGTGTGACCAAGCTTCTGGGACCCTAGGATCCTGGGATCCTAAGATCCTGAGCTTGTTATAGCACCTGGAAGTGATACCTCCTCTGGGGACTGTAGTGCTCTCTGCTGAGTTCTAAACTGAG
Seq A exon
CATTCAGGAGGAGGACAGACCAGTCATGACACTTGCCAATCAAGTACAG
Seq C2 exon
AATATGCTGTCATTCTGGGATGTGGTAATATATTTCTCTGCAGAGGAGAGGGAATACCTGGGTCCTCCTCAGTGGAAATTGTACAGGGATGTGATGCTGGAGAATTACAACAACCTTGTCTTTCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057396_MULTIEX1-3/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCTCTGGGGACTGTAGTG
R:
TCTCCAGCATCACATCCCTGT
Band lengths:
148-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types