MmuEX1028656 @ mm10
Exon Skipping
Gene
ENSMUSG00000046792 | Zfp787
Description
zinc finger protein 787 [Source:MGI Symbol;Acc:MGI:1914359]
Coordinates
chr7:6131491-6143150:-
Coord C1 exon
chr7:6143062-6143150
Coord A exon
chr7:6134642-6134708
Coord C2 exon
chr7:6131491-6133171
Length
67 bp
Sequences
Splice sites
3' ss Seq
TGAATTTATTTTTGATCTAGCCC
3' ss Score
5.78
5' ss Seq
GACGTAAGC
5' ss Score
7.1
Exon sequences
Seq C1 exon
GGACCCAGATATGGAGCTTCGAGAAGAAGCTTGGTCTCCGGGGCCACTGGATTCTGAGGACCAGCAGATGGCCAGTCATGAGAACCCAG
Seq A exon
CCCCTGAAGGCCAGCGCCTGAACATGAGCTCCAGGCTGCTTCGAGAGTTCCCATCTTAACCTTTGAC
Seq C2 exon
TGGACATCCTCATCATGGATGACGATGACGTCCCCAGCTGGCCCCCGACCAAGCTGTCCCCACCCCAGTCTGCACCTCCTCCTGGGCCCCCGCCCAGGCCGCGGCCACCAGCACCCTACATCTGCACTGAGTGTGGCAAAAGCTTCAGCCACTGGTCGAAGCTGACACGACACCAGCGCACGCACACAGGCGAGCGGCCCAATGCCTGTACCGACTGCGGCAAGACCTTCTCGCAGAGCTCGCATTTGGTGCAGCACCGGCGCATCCACACAGGCGAGAAGCCATATGCCTGCTCAGAGTGCGGCAAGCGCTTTAGCTGGAGCTCCAACCTCATGCAGCACCAGCGCATCCACACGGGCGAGAAGCCTTATACTTGCCCCGACTGCGGCCGCAGCTTCACACAGAGCAAGAGCCTAGCCAAGCACCGGCGCTCCCACAGTGGTTTAAAGCCCTTCGTGTGTCCGCGCTGCGGCCGTGGCTTCAGCCAGCCCAAGAGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046792_MULTIEX1-3/3=1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion (Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.376
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0009621=zf-C2H2=WD(100=6.5),PF134651=zf-H2C2_2=WD(100=7.0),PF097235=Zn-ribbon_8=WD(100=12.4),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3)
Main Inclusion Isoform:
ENSMUST00000094870fB20010
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGGATTCTGAGGACCAGCA
R:
CAGTGCAGATGTAGGGTGCTG
Band lengths:
173-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types