Special

MmuEX1028674 @ mm10

Exon Skipping

Gene
Description
zinc finger protein 821 [Source:MGI Symbol;Acc:MGI:1923121]
Coordinates
chr8:109709411-109717906:+
Coord C1 exon
chr8:109709411-109709527
Coord A exon
chr8:109712452-109712579
Coord C2 exon
chr8:109717762-109717906
Length
128 bp
Sequences
Splice sites
3' ss Seq
GGTGAAACCTTGTGTTTCAGACC
3' ss Score
4.59
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
GTCAGCACCGTACGAGGAGGTAGTGACCTGTCCAGGGGTGAAACTGGGGAAGAACGGAGCTTGGATATCAGGGAAACATGTCCCGTAGGAAACAGACAAACCCAAATAAAGTTCACT
Seq A exon
ACCTTCTCTCTTACCTGCTTTCCCACTTCCCTTTCGGAGTACAAGTCTGTCTGTTGACTCTGGAGAATTTGAAAATGCAGTCCTTTGTGTGCTCACATTTCATGTCCTGAAATCAAGGAAGCCACCAG
Seq C2 exon
GGGATCAAGTCTTTGCTGGGTTAGAAGAACAAGCCCGACAGGCAATGATGAAAACCGATTTTCCTGGAGACCTTGGCAGTCAGCGACAAGCTATCCAACAACTACGAGATCAGGACTCCAGTAGCAGTGAGTTCTGCACCTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031728_MULTIEX1-3/6=2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.821 A=0.000 C2=1.000
Domain overlap (PFAM):

C1:
NO
A:
NO
C2:
NO


Main Inclusion Isoform:
ENSMUST00000034163fB20022


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCGTACGAGGAGGTAGTGA
R:
TCACTGCTACTGGAGTCCTGA
Band lengths:
242-370
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types