MmuEX1028728 @ mm10
Exon Skipping
Gene
ENSMUSG00000072774 | Zfp951
Description
zinc finger protein 951 [Source:MGI Symbol;Acc:MGI:2441896]
Coordinates
chr5:104817308-104860070:-
Coord C1 exon
chr5:104859939-104860070
Coord A exon
chr5:104837288-104837515
Coord C2 exon
chr5:104817308-104817352
Length
228 bp
Sequences
Splice sites
3' ss Seq
TCCCTCTGTTTAATTTGAAGGGA
3' ss Score
7.94
5' ss Seq
TGTGTGGGT
5' ss Score
-1.86
Exon sequences
Seq C1 exon
TCACATTGCAGGTTCTGCGAGAGTTTACGTGATTTTGTGTGTTGTTTTTTCAACTCAACTGCCGAGTACTGAGGGAAGCTCAGGAAGCTCTGAAGATACAGCATGGCCAGCACATCCTCACTCTCCGCAAAG
Seq A exon
GGATGCACCATCATCTTCTCCATCATCCAGTCTCAGTACTCCATCTTCAGATTTTTTGATAGCCTCACTTTAGTGGCTTCAGAGAAAATTATGTTTCATGGACCTGCACAGGATGCTATGAAGCCCTTCAGATCTGCAGGGATGGTCATCTCTTGTTATGAGAGCTTCTTCATTCACAGGATCCGCAAAGGACAACAAGGGACTTCAGGGATGCAGACTTAACTGTGT
Seq C2 exon
GTACTCACAGATACTCTTCTTGCAAATGCATGCCCCATTCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000072774_MULTIEX1-3/10=C1-4
Average complexity
C3
Mappability confidence:
93%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.082 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSMUST00000186219fB20057
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTTCTGCGAGAGTTTACGTG
R:
TTGAATGGGGCATGCATTTGC
Band lengths:
165-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types