MmuEX1028811 @ mm10
Exon Skipping
Gene
ENSMUSG00000031310 | Zmym3
Description
zinc finger, MYM-type 3 [Source:MGI Symbol;Acc:MGI:1927231]
Coordinates
chrX:101415188-101415938:-
Coord C1 exon
chrX:101415761-101415938
Coord A exon
chrX:101415495-101415570
Coord C2 exon
chrX:101415188-101415406
Length
76 bp
Sequences
Splice sites
3' ss Seq
CTAACCTCCTTACCTCCCAGGAT
3' ss Score
9.5
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
Exon sequences
Seq C1 exon
GGAGATCTGGAACACCAAGGACTCAGTTGTGGTACAGACTGGTCCAGGAGGCTCCTTCCATGAGTTCTGCACATCTGTCTGTCTCTCTCTCTATGAGGCCCAGCAGCAGCGTCCAATCCCCCAGTCTGGGGATCCTGCCGATGCCACTCGCTGCAGCATATGCCAGAAGACTGGAGAG
Seq A exon
GATCTCGTCATCAAGTCTACAGCCTGAAGCACAGGTTGGGGGGTCCTAGGCCCATTGTCTGCTGTAAAGGTCTAGG
Seq C2 exon
GTTCTTCATGAGGTCAGCAATGGCAGCGTGGTACACCGACTCTGCAGCGATTCTTGCTTCTCCAAATTCCGAGCCAACAAGGGACTGAAAACCAACTGTTGTGACCAGTGTGGGGCTTACATCTATGCCAGGCCTGGGGGCCTTGGCCCAGAGCTCCTGTTTCATGATGGTCAACAAAAGCGGTTTTGCAACACAACGTGCTTGGGGGCATACAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031310_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.155 A=0.000 C2=0.019
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(68.9=51.7),PF064679=zf-FCS=PU(38.5=25.0)
A:
NO
C2:
PF064679=zf-FCS=PD(56.4=30.1),PF064679=zf-FCS=WD(100=63.0),PF064679=zf-FCS=PU(0.1=0.0)
Main Inclusion Isoform:
ENSMUST00000063577fB20106
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCTCTATGAGGCCCAGCAG
R:
GGCTCGGAATTTGGAGAAGCA
Band lengths:
168-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types