RnoEX0102039 @ rn6
Exon Skipping
Gene
ENSRNOG00000003707 | Zmym3
Description
zinc finger MYM-type containing 3 [Source:RGD Symbol;Acc:1564967]
Coordinates
chrX:71309808-71310524:-
Coord C1 exon
chrX:71310366-71310524
Coord A exon
chrX:71310115-71310190
Coord C2 exon
chrX:71309808-71310026
Length
76 bp
Sequences
Splice sites
3' ss Seq
TTGACTTTCTTACCTCCCAGGAG
3' ss Score
9.56
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
Exon sequences
Seq C1 exon
GATTCAGTTGTGGTACAGACTGGTTCAGGAAGCTCCTTCCAAGAGTTCTGCACATCTGTCTGTCTGTCTCTCTATGAGGCCCAGCAGCAGCGTCCAATCCCCCAGTCTGGGGACCCTGCAGATGCCACTCGCTGCAGCATATGCCAGAAGACTGGAGAG
Seq A exon
GAGCTCGCCATCAAGTCTACAGCCTGAAGCACAGGTTGGGGGGTCCTAGGCCCATTGTCTGCTGTAAAGGTCTAGG
Seq C2 exon
GTCCTACATGAGGTCAGCAATGGCAGCGTGGTGCACCGACTCTGCAGTGATTCTTGCTTCTCCAAATTCCGAGCCAACAAGGGACTGAAAACCAACTGTTGTGACCAGTGTGGGGCTTACATCTATGCCAGGCCTGGGGGCCTTGGCCCAGAGCTCCTGTTCCATGATGGTCAACAAAAGCGGTTTTGCAACACAACGTGCTTGGGGGCATACAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003707_CASSETTE3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.073 A=0.000 C2=0.020
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(54.5=45.3),PF064679=zf-FCS=PU(38.5=28.3)
A:
NO
C2:
PF064679=zf-FCS=PD(56.4=30.1),PF064679=zf-FCS=WD(100=63.0),PF064679=zf-FCS=PU(0.1=0.0)
Main Inclusion Isoform:
ENSRNOT00000004972fB17070
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTCTCTATGAGGCCCAGCA
R:
GGCTCGGAATTTGGAGAAGCA
Band lengths:
169-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]