RnoINT0169152 @ rn6
Intron Retention
Gene
ENSRNOG00000003707 | Zmym3
Description
zinc finger MYM-type containing 3 [Source:RGD Symbol;Acc:1564967]
Coordinates
chrX:71309808-71310524:-
Coord C1 exon
chrX:71310366-71310524
Coord A exon
chrX:71310027-71310365
Coord C2 exon
chrX:71309808-71310026
Length
339 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
TGCATATGTATGTGTGGCAGGTC
3' ss Score
7.42
Exon sequences
Seq C1 exon
GATTCAGTTGTGGTACAGACTGGTTCAGGAAGCTCCTTCCAAGAGTTCTGCACATCTGTCTGTCTGTCTCTCTATGAGGCCCAGCAGCAGCGTCCAATCCCCCAGTCTGGGGACCCTGCAGATGCCACTCGCTGCAGCATATGCCAGAAGACTGGAGAG
Seq A exon
GTGAGGGTACTCACCACAGGCCTGCTGGCTCACACCCGCCCCTCTGCTTCTCCAGCTGCAGGGGCAGAACCCTGGGAGAAAGGGATTTGGGTGGAAAAGGTAGCTAATAGGAGGGAGCAAATTCAAGGATAGAGCTTCTCCCAGGATGTATGCAGTTGACTTTCTTACCTCCCAGGAGCTCGCCATCAAGTCTACAGCCTGAAGCACAGGTTGGGGGGTCCTAGGCCCATTGTCTGCTGTAAAGGTCTAGGGTGAGGTGGGAGTCCTGTCCTTGCATTGATTGGGGTGGGCGGTGGTGGCCTGGCCTCAGCTCAGGGTGTGCATATGTATGTGTGGCAG
Seq C2 exon
GTCCTACATGAGGTCAGCAATGGCAGCGTGGTGCACCGACTCTGCAGTGATTCTTGCTTCTCCAAATTCCGAGCCAACAAGGGACTGAAAACCAACTGTTGTGACCAGTGTGGGGCTTACATCTATGCCAGGCCTGGGGGCCTTGGCCCAGAGCTCCTGTTCCATGATGGTCAACAAAAGCGGTTTTGCAACACAACGTGCTTGGGGGCATACAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003707:ENSRNOT00000004972:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.073 A=NA C2=0.020
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(54.5=45.3),PF064679=zf-FCS=PU(38.5=28.3)
A:
NA
C2:
PF064679=zf-FCS=PD(56.4=30.1),PF064679=zf-FCS=WD(100=63.0),PF064679=zf-FCS=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGACTGGTTCAGGAAGCTCC
R:
AGCACGTTGTGTTGCAAAACC
Band lengths:
346-685
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]