HsaINT1047273 @ hg38
Intron Retention
Gene
ENSG00000147130 | ZMYM3
Description
zinc finger MYM-type containing 3 [Source:HGNC Symbol;Acc:HGNC:13054]
Coordinates
chrX:71249461-71250203:-
Coord C1 exon
chrX:71250026-71250203
Coord A exon
chrX:71249680-71250025
Coord C2 exon
chrX:71249461-71249679
Length
346 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
TGCGTGTATGTGTGTGGCAGGTC
3' ss Score
8.36
Exon sequences
Seq C1 exon
GGAGATCTGGAACACCAAGGACTCGGTTGTGGCGCAGACTGGTTCTGGAGGCTCCTTCCATGAGTTCTGCACATCCGTCTGTCTCTCCCTGTATGAGGCCCAGCAGCAGCGCCCGATCCCCCAGTCTGGGGATCCCGCCGACGCTACTCGCTGCAGCATATGCCAGAAGACTGGAGAG
Seq A exon
GTGAGGACACTCAGTGGGGGCTGATTTACAGAGCCTGGCCAGCCCTGACCTGCCCCTCCCATCCTGGGGCTGCAGGGTCCAGGCCCTGTGGAAAGGGGAGTGGGGAGGAAAGGCGGCCATCATGAGGGAGCGTATTCAAGGACAGAGCTTCTCCAGGATGTGCACAGCTGGCCTTCCTTACCTCCCAGGACCTCACCATCAAGTCGGCAGCCTGCGGCGCAGGTTGGGGGGTCCCTGGGCCCACTGTCTGCTGTGAAGGTCTAGGGTGAGGTGGGGGGCTGACCTTGCATTGGGGTGGGCGGTGGTGGCCAGGCCCTAGCTCAGGGTGCGTGTATGTGTGTGGCAG
Seq C2 exon
GTCCTGCACGAGGTCAGCAATGGCAGCGTGGTACACCGGCTCTGCAGCGATTCTTGCTTCTCCAAATTCCGGGCCAACAAGGGACTGAAAACCAACTGTTGTGACCAGTGTGGGGCTTACATCTACACCAAGACCGGGAGTCCTGGCCCTGAGCTCCTCTTCCACGAGGGCCAACAAAAGCGGTTCTGCAACACAACCTGCTTGGGGGCGTACAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000147130:ENST00000373998:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.148 A=NA C2=0.009
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(68.9=51.7),PF064679=zf-FCS=PU(38.5=25.0)
A:
NA
C2:
PF064679=zf-FCS=PD(56.4=30.1),PF064679=zf-FCS=WD(100=63.0),PF064679=zf-FCS=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACACCAAGGACTCGGTTG
R:
TTTTGTTGGCCCTCGTGGAAG
Band lengths:
349-695
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains