GgaINT0075042 @ galGal4
Intron Retention
Gene
ENSGALG00000005533 | ZMYM3
Description
zinc finger, MYM-type 3 [Source:HGNC Symbol;Acc:HGNC:13054]
Coordinates
chr4:2274594-2275107:+
Coord C1 exon
chr4:2274594-2274771
Coord A exon
chr4:2274772-2274894
Coord C2 exon
chr4:2274895-2275107
Length
123 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
CAGCAATGTTGCCTCTGCAGGTC
3' ss Score
7.67
Exon sequences
Seq C1 exon
GGAGATCTGGAATACCAGGGACTCCGTGGTTGCCCAGATAGGTTCAGGTGGCTCTTTCCACGAGTTCTGCACCTCCGTCTGCCTCTCCCTCTATGAGGCCCAGCAACAGAGACCAGCACCTCAGTTTGCAGACCCCTCAGACACCATCCGTTGCAGTGTCTGCCATAAGCCTGGTGAG
Seq A exon
GTAAGGAAATCCCTTGTCTTTCCCTTGTCCTGGATCCGGTTGTTGTGACCTCCAGCCCTTGGCCCTGCTTGGGACCATCACTGGGCATTTGCTGTGAGAGTGACAGCAATGTTGCCTCTGCAG
Seq C2 exon
GTCCAGCATGAGGTCAGCAATGGGAATGTAGTTCACCGCATTTGCAGTGACGCCTGCTTCACCAAGTTCCGAGCCACCAAGGGGCTGAAAACCAACTGTTGTGACTACTGTGGACTTTATATATACAATAAAGGCATGCCCGTGGAGTACCTCTTCCATGAAGGCCAGCAAAAGCGCTTCTGCAACTCTAGCTGTCTCAACAGTTACAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005533:ENSGALT00000008873:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(68.9=51.7),PF064679=zf-FCS=PU(40.0=26.7)
A:
NA
C2:
PF064679=zf-FCS=PD(55.0=31.0),PF064679=zf-FCS=WD(100=62.0),PF064679=zf-FCS=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGGTTGCCCAGATAGGTTC
R:
AGTTGGTTTTCAGCCCCTTGG
Band lengths:
251-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]