BtaINT0164763 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008492 | ZMYM3
Description
zinc finger, MYM-type 3 [Source:HGNC Symbol;Acc:HGNC:13054]
Coordinates
chrX:84693538-84694289:+
Coord C1 exon
chrX:84693538-84693715
Coord A exon
chrX:84693716-84694070
Coord C2 exon
chrX:84694071-84694289
Length
355 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
TGTGTGTGTGTGTGTGGCAGGTC
3' ss Score
10.83
Exon sequences
Seq C1 exon
GGAGATCTGGAACACCAAGGACTCCGTTGTGGCGCAGACCGGTTCGGGAGGTTCCTTCCATGAGTTCTGCACATCCGTCTGTCTCTCCCTGTATGAGGCCCAGCAGCAGCGCCCAATCCCCCAGTCTGGGGATCTTGCTGATGCCACTCGCTGCAGCATATGCCAGAAGACTGGAGAG
Seq A exon
GTGAGGAAGCTGGATGGGGGCTGACTTTCAGAGCCTGGCCAGCCCTGAGCCGCCCCTGCAATCCTGGGGCTGCAGGGGCCAGGCCCTGTGGATGAGGGATGTGGGGAGGGGGAAGCAGCCATCGTGAGGGAGTGGATTCAAGGCTAGAGCTTCTCCAGGATTGTGTGCAGCTGGCCGTCCTTGCCTCCCAGGACCTCAGCATCAAGTCGACATCCTGATGTGCAGGTTGGGGGGTCCCTGGGCCCGCTGTCTGCTGTAAAGGTCTAGGGTGAGGTGGGGCGGGCCATCCTTGCACCAGGGTGGGTGGTGGTGGCCAGGCCCCAGCTCAGGGTGTGTGTGTGTGTGTGTGTGGCAG
Seq C2 exon
GTCCTGCATGAGGTCAGCAATGGCAGCGTGGTGCACCGGCTCTGCAGCAATTCTTGCTTCTCCAAATTCCGGGCCAACAAGGGACTGAAAACCAACTGTTGTGACCAGTGCGGGGCTTACATCTACACCAAGACTGGGAGCCCTGGCCCCGAGCTCCTCTTCCACGAGGGCCAACAAAAGCGGTTCTGCAACACAACCTGCTTGGGGGCATACAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008492:ENSBTAT00000011195:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(68.9=51.7),PF064679=zf-FCS=PU(36.8=23.3)
A:
NA
C2:
PF064679=zf-FCS=PD(57.9=30.1),PF064679=zf-FCS=WD(100=63.0),PF064679=zf-FCS=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACACCAAGGACTCCGTTG
R:
TTTTGTTGGCCCTCGTGGAAG
Band lengths:
349-704
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]