MmuEX1028812 @ mm10
Exon Skipping
Gene
ENSMUSG00000031310 | Zmym3
Description
zinc finger, MYM-type 3 [Source:MGI Symbol;Acc:MGI:1927231]
Coordinates
chrX:101417287-101420849:-
Coord C1 exon
chrX:101420159-101420849
Coord A exon
chrX:101418795-101418952
Coord C2 exon
chrX:101417287-101417330
Length
158 bp
Sequences
Splice sites
3' ss Seq
CCCCCTCTTCCGATCTGCAGCCC
3' ss Score
9.44
5' ss Seq
CAGGTCCGT
5' ss Score
6.47
Exon sequences
Seq C1 exon
GCCATGGAGGGAGACGGGGGTGTAGCCTTGCAGAACCTGCTTTGGGGGGGGGGGTCACCAGGCAGTAACCGTTACTGCATAGGCGTTGTCACTAAGCCAGAACCATTTAACTGGCAAGGGTAAGCTTAAGACACCCCATAACTACGACTCTTAGACAGGTTGGAAGTGGGGGCTGAGGTTGCAGACAAGGGGAGGAGGGGCACTTGAGGGTTGGGTCTTTGCCTCCCCCATTCTCCGCTGTCACTACCCCAACAGTCGCCCGGGGGGCCGGGCCCCGGAGAGGTGGGGATGGGGGAGGGTAATCTTGGCAGGCGTCTGCTGCATGGCGTAGGTAGGGAGTGCTGAGGGGGGACGCTGGGGGGAACACGAGTGGGAAGCGGAGAGCCACGGGGAGGGGGAGGGGACCGGGAACCATTTGAATGAGAGGAGGGGATCACGGGTAGAGTGGGCTCTGGAGATAGGGCGGGCACGGGTGTGACGGGGCCAGGCTCTTGAGCCAG
Seq A exon
CCCATACCCAGCCATGGACCCCAGTGATTTCCCCAGTCCATTTGACCCATTGACCCTGCCAGAGAAGCCCCTGGCTGGAGACCTTCCAGTAGACATGGAATTTGGAGAGGATCTGCTGGAATCTCAGACTGCCCCAAGTCGAGGATGGGCTCCCCCAG
Seq C2 exon
GAGATGGCCTGACTGGGAAGGAGATTGAGAAGCCGCCTGAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031310_CASSETTE6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.969 C2=0.982
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGATGGGGGAGGGTAATCTT
R:
GCGGCTTCTCAATCTCCTTCC
Band lengths:
251-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types