MmuEX1028860 @ mm10
Exon Skipping
Gene
ENSMUSG00000070420 | Zscan25
Description
zinc finger and SCAN domain containing 25 [Source:MGI Symbol;Acc:MGI:3647079]
Coordinates
chr5:145280500-145286509:+
Coord C1 exon
chr5:145280500-145280627
Coord A exon
chr5:145283352-145283780
Coord C2 exon
chr5:145286308-145286509
Length
429 bp
Sequences
Splice sites
3' ss Seq
CGTGCATCTTCTCTTCTCAGACG
3' ss Score
8.96
5' ss Seq
GCGGTGGGT
5' ss Score
6.6
Exon sequences
Seq C1 exon
AGGTGCTAAGCGCGCAGTCAAGGCCCCGGGCAGGCCGGGTCGGGGCGGGGCTGGACGGAGCAAGCTGCTGCTCGGCGGGGCAGCAGCGGGCCAGGGGTCGTAGGCTCCACGCACAGCGGTGATCTCAG
Seq A exon
ACGGGTCACCCTTGTTGTCATCCTCAGCCTTGCCGGAGCTTGAAGATGCTGAAAGAGCGTCTGGAGATGGCAGGAGATCCTCAGCAGCAGATGGGTGCTCCAGTGGTCAAACTGGAGAAGGAGCTGCCATGGGGCAGGGGAGGGGAGGACTCGAGTCCCGAGGCATTTCGGTTGAGGTTTCGGCAGTTCCGCTACCAAGAGGCTGCTGGTCCCCAGGAAGCCCTCAGGGAGCTCCAAGAGCTCTGTCGCCGGTGGCTGAGGCCGGAGCTGCACACCAAAGAGCAGATCCTGGAGCTGCTGGTGCTGGAGCAGTTCCTCACCATCCTGCCCCGAGAGTTCTACACCTGGATCCGGGAACACAGCCCAGACAGCGGCAAGGCTCTGGTGGCCATGGTGGAGGAGCTGATGGGGAGCACGGAGGCCAAGGCG
Seq C2 exon
GTTCCATGCCATGCCCAGGGAGAGCAGCTGGTCACAGCCCTTGGCGGAGCATCGTGGCAATCAGGCATCCACCTGGGGCCGGTAGAAGTCAAACCTGAGTGGGGGATACCCCAGGGGGAAGGAGTTCAGAGCCTAGGCCCAAGCACCACAGAACAGCTGAGCCAGGGCCCTGGAGATGGGACACAGGCCTTCCAGGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000070420_MULTIEX1-1/4=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.170 C2=0.484
Domain overlap (PFAM):
C1:
NA
A:
PF0202312=SCAN=PU(96.8=71.9)
C2:
PF0202312=SCAN=PD(1.1=1.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTAAGCGCGCAGTCAAG
R:
CTTGTTCCTGGAAGGCCTGTG
Band lengths:
327-756
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types