HsaEX0073798 @ hg38
Exon Skipping
Gene
ENSG00000197037 | ZSCAN25
Description
zinc finger and SCAN domain containing 25 [Source:HGNC Symbol;Acc:HGNC:21961]
Coordinates
chr7:99616946-99622640:+
Coord C1 exon
chr7:99616946-99617058
Coord A exon
chr7:99619561-99619993
Coord C2 exon
chr7:99622549-99622640
Length
433 bp
Sequences
Splice sites
3' ss Seq
GTGTCTCTTGTTCTCAAAAGGGT
3' ss Score
8.05
5' ss Seq
GCGGTGGGT
5' ss Score
6.6
Exon sequences
Seq C1 exon
GCAGCTCACTTCCGGACCGCGGATAGCACTGGCGACCCTAGCGGGTGAGAGGCCCTTCAGGGCCGCGGCGGGTGAGAGCCTCTTCAGGGCCGCAGCGGGTGGCGGGCGAAGTG
Seq A exon
GGTCATTGATGCAGTCATTCTCAGTCTCCTCGGAGGGAGTCTGAAGATGCTTAAAGAGCATCCAGAGATGGCGGAAGCTCCTCAGCAGCAGTTGGGTATTCCTGTGGTGAAACTGGAGAAAGAGTTGCCATGGGGCAGAGGAAGGGAGGACCCTAGTCCAGAGACTTTTCGGCTGAGGTTTCGGCAGTTCCGCTACCAGGAGGCAGCTGGACCCCAGGAAGCTCTTAGGGAGCTCCAGGAGCTCTGTCGTCGGTGGCTGAGGCCCGAGTTGCACACCAAGGAGCAGATCCTGGAGCTGCTGGTGCTGGAGCAGTTCCTCACTATCCTGCCCCGCGAGTTCTACGCCTGGATCCGGGAGCATGGCCCAGAGAGTGGCAAGGCCCTGGCCGCCATGGTGGAGGACCTGACAGAAAGAGCACTGGAGGCCAAGGCG
Seq C2 exon
CACTACCTGTTCTGCAGGCGGGTCCTGGCCTCCCCGCAGTGAATCCCAGAGACCAAGAGATGGCAGCTGGGTTCTTTACTGCTGGATCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197037_MULTIEX1-4/7=C1-6
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.174 C2=0.968
Domain overlap (PFAM):
C1:
NA
A:
PF0202312=SCAN=PU(97.9=72.1)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTTCCGGACCGCGGATAG
R:
TGCGATCCAGCAGTAAAGAACC
Band lengths:
198-631
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development