RnoEX0102298 @ rn6
Exon Skipping
Gene
ENSRNOG00000042213 | Zscan25
Description
zinc finger and SCAN domain containing 25 [Source:RGD Symbol;Acc:1308619]
Coordinates
chr12:11779779-11785493:-
Coord C1 exon
chr12:11785428-11785493
Coord A exon
chr12:11782804-11783232
Coord C2 exon
chr12:11779779-11779980
Length
429 bp
Sequences
Splice sites
3' ss Seq
TGTGCATCTTCTGTTCTCAGACG
3' ss Score
8.78
5' ss Seq
GCGGTGGGT
5' ss Score
6.6
Exon sequences
Seq C1 exon
GCAGCAGGTCGGTGGGGCAGCAGCGGCTGCGAAGGTCGTTATCTCCTCGCACAGCCGTGATCTTAG
Seq A exon
ACGGGTCACCCCTGTTGTTGTCCTCAGTCGTGCTGGAGCTTGAAGATGCTGAAAGAGCGTCTGGAGATGGCCGAAGATCCTCAGCAGCAGATGGGTGCTCCAGTGGTCAAACTGGAGAAGGAGCTGCCATGGGGCAGGGGAGGGGAGGACTCTAGTCCTGAGGCTTTTCGGCTAAGGTTTCGGCAGTTCCGCTACCAAGAGGCTGCTGGTCCCCAGGAAGCCCTCAGGGAGCTCCAAGAGCTGTGTCGACGGTGGCTGAGGCCTGAGCTGCACACCAAAGAGCAGATCCTGGAGCTGCTGGTGCTGGAGCAGTTCCTCACCATCCTGCCCCGAGAGCTCTACACCTGGATCCGGGAACACAGCCCAGACAGTGGCAAGGCTCTGGTGGCCATGGTGGAGGAGCTGATGGGGAGCACGGAGGCCAAGGCG
Seq C2 exon
GTTCCATGCCATGCCCAGGGAGAACAGCTGGTCACAGCCCTGGGCGGAGGATCTTGGCAATCAGGTATCCACTTGGGGCCAGTAGAAGTCAAGCCTGAGTGGGGGATCCCTCAGGGTGAAGGAGTTCAGAGCTTAGGCCCAAGCACCGCAGAACAGCTGAGCCAGGGCCCTGGAGATGGGACACAGGCCTTCCAGGAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000042213-'1-3,'1-0,2-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.200 C2=0.476
Domain overlap (PFAM):
C1:
NA
A:
PF0202312=SCAN=PU(96.8=71.9)
C2:
PF0202312=SCAN=PD(1.1=1.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCGAAGGTCGTTATCTCC
R:
CTTGCTCCTGGAAGGCCTGT
Band lengths:
243-672
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]