MmuEX1029027 @ mm10
Exon Skipping
Gene
ENSMUSG00000026755 | Arpc5l
Description
actin related protein 2/3 complex, subunit 5-like [Source:MGI Symbol;Acc:MGI:1921442]
Coordinates
chr2:39005348-39013187:+
Coord C1 exon
chr2:39005348-39005409
Coord A exon
chr2:39012086-39012096
Coord C2 exon
chr2:39013117-39013187
Length
11 bp
Sequences
Splice sites
3' ss Seq
GTGTTTCTATTCCCTTTTAGAAT
3' ss Score
11.58
5' ss Seq
AGGGTGAGA
5' ss Score
6.65
Exon sequences
Seq C1 exon
GCGCAGAGAAGGCTGCAGTTCTTCTGTTCCCTCGGTTTTATTCGGAAGCTTGAAGTTCTCTG
Seq A exon
AATGAGAGAGG
Seq C2 exon
GGGACATGCTTCGGGCGTTCCATGCAGCTTTGCGGAACTCACCAATCAACACCAAGAATCAAGCTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026755-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=0.524
Domain overlap (PFAM):
C1:
NA
A:
PF046999=P16-Arc=FE(6.5=100)
C2:
PF046999=P16-Arc=PD(17.8=34.8)
Main Inclusion Isoform:
ENSMUST00000090993fB6196
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTTCTTCTGTTCCCTCGG
R:
ATTGGTGAGTTCCGCAAAGCT
Band lengths:
94-105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types