MmuEX6000054 @ mm9
Exon Skipping
Gene
ENSMUSG00000063087 | Gm10125
Description
predicted gene 10125 [Source:MGI Symbol;Acc:MGI:3642044]
Coordinates
chr18:5520589-5540676:-
Coord C1 exon
chr18:5540604-5540676
Coord A exon
chr18:5525212-5525387
Coord C2 exon
chr18:5520589-5520767
Length
176 bp
Sequences
Splice sites
3' ss Seq
CTCCTAATCGTGTTTGCCAGTTC
3' ss Score
6.67
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
CATGGAAGGGGAATAAACTGGACTGGACTTCCTGTCCACCCTCTACAACTAACAAGGACCTTTGGTGATCTCG
Seq A exon
TTCCAGGTGGTGTGAACTTCTCCTGGGACTGTCCCTCCCAGCAGCTCCAGAGCCACACTGCCTTGGAAGACCCGACAGACAGATTGCTCCACCTTGACCCTTCTTTCCACAGTGTCTTCAGCATCTCTGTCCCTCCCATTCCCACTCCATTTCTTCTATCTCTCCCCATGCAAGAG
Seq C2 exon
TGGATCAGCTGCATCCTGGGCCAGTAGGGTCCTTTGCAGGTGGCCAACCAAGAGAAAGAGGAAGTGGCTCTTGGAATCACAGACCCAGGCTGGGAAGAATTTGTGTGATGCAGTGGCCACCCCCTAAGAGCTGCAGTGATCCTCTCTGAGCCCTTCAGAAAGCACTATGACCACAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063087-'7-6,'7-5,9-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGGGGAATAAACTGGACTGG
R:
GGTCATAGTGCTTTCTGAAGGGC
Band lengths:
242-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: