MmuINT0069652 @ mm9
Intron Retention
Gene
ENSMUSG00000063087 | Gm10125
Description
predicted gene 10125 [Source:MGI Symbol;Acc:MGI:3642044]
Coordinates
chr18:5520589-5525387:-
Coord C1 exon
chr18:5525212-5525387
Coord A exon
chr18:5520768-5525211
Coord C2 exon
chr18:5520589-5520767
Length
4444 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
ATCTGGGTTCTTTCCTCTAGTGG
3' ss Score
8.29
Exon sequences
Seq C1 exon
TTCCAGGTGGTGTGAACTTCTCCTGGGACTGTCCCTCCCAGCAGCTCCAGAGCCACACTGCCTTGGAAGACCCGACAGACAGATTGCTCCACCTTGACCCTTCTTTCCACAGTGTCTTCAGCATCTCTGTCCCTCCCATTCCCACTCCATTTCTTCTATCTCTCCCCATGCAAGAG
Seq A exon
GTAAGTAGAGTGAACAAGAAGGCTACCCTTGGGCAGGCAAGCCTTCTTCACAGAATTTATTGTCTTCCACAAGAATTTTCCAAGTCCTTGTAGCCCAAAGTCAGGAAAACTGGCAGAGTCTCTCACAGGAAAATGAAATATTAAGAAAAAATGCAATTCCAAAGACAGGCAGTGGATGAAAAGAACTTTCCATTTTCAATTCTAAATGTCAAACAGCCACTCTAGTTTTTATTGTGAAGCAAATAACCATTATTTGTTGAAATTCTGCTGCAAATAACGGTATGTTAGGGCTTTTTAGGAGAAATTATTGAGAAATGTATTTAACTCACTCAGAATTCACACCAGGATGACTATTTTAAGCACAATGAAATACCATTTTAATAATTTCATATAATTTTGTCATGATGGATAGCTACTTTAAATTTACACGGCAGCTATGTAAATGGCCATAAGTGATTTTTCATTATCCTAAATGGTGAGTCATTTGAGATATTGATGTAAGCACAGTGCAGGAACAACATTTACAGTTTATTAAGCTAAAAGGATGCTAATCAATTATTATATTTAAAATGACACCCATGAGGAAAAGAAACTGATTTGCTAAGATACACTTTTTTAAGAGCTGGAAAATCAGTAAAGGTGAGTGTTCTGGTCGATGGTCTATTTGACCTCAGTAAATGGTTGTGCCCTTGGTGCTGAGCAGAGCAGTGCTGTTGTATCCAGTGAGATGCCCAGGAGTCAGGTAGCTCCTCTGGGGGTAACAAGACCAACCACACTGCTTTGTGGTAGTGTAACCCCAGATCTACTCCCACTCCTTACATCAGTCATCTTTCTGTTACAGTAACAAAATGTCAGAAACAGCTTCCTTTGGACTCACAGTTTTAAGGTCTCTGTTATGTGATTGGTTAAAGCCATTGATTTGGTTCTGTGGTACGTGCACAGCAGAGCAAAACTACTCACCTAATGAGCCAGGGAACAGAGAGAGGAAAGGCTACACAGTCCCTTCCAGGACTTACCTTCCCAATGATCTAGAGACTCACCAGGAAGTTCCTCTTTTTAAAGACTCCAGCACCTCCCAAAGGAGCTACCATGGCCACCGAACCTGCAGCATATGGGTTTGGAGAGCCATTCAAGATCCAAGATACTGCCACTCTAGAATTCGGATTACATATTAACTTTTGGACTGTATACTATTGTTTCTTTGGGTTTTCAAAAAAGAATAGCTTTTCTTCAAAGTCTTGCCATCCGAATGGCATCAGAGCAGAAGGGGCTCAGCCATAGAAATCCCATTTGGGAGCCAGCATGAAGTCCTGCTGATCTTTTCTATTGCAAACTGTTCTATTCTGGGTCATTATGGCAATCACAGTGATTAAATGATGAGCTAAATAAACTAACCTTATTTTTTATGTAACTAATGTTTCTGAACAATATGCGATAGATTTACAAAGTTTATCCATTTTTAAAATATGCATTTTGGCACCAAAGAATCAAGTTCATTTCACTGAGGAGGAATTTATTTATACTTTTCAATGTGATTCCTACTAGCTTACATGTAAAATTTAAACATCATTAAGTGTACTTCGGTTTTCACAGCTAAATTGTAGTTCCGTTAGAAGCTGATATTTCTTAGAAAGGAGAAAGCATACATTTGGATGTCAAATTGCTTTCAATGGTCAATTCATACTCTTTAGTCATATTTCTTATGATTCTATAACACTTAGAAAACTCAAAGCAAACAGAGCATTACTTAGCATCCTAAGAGTCATCTTCCTAAGTTGTTCCATTTTGTATACTTTTTACCTTACAGAGTAGACTTCATTTGGTGCCACATGCCTATAGTTCTAACTACCAGGGCAGCTGAAGCAGGAAGATCAGGCCCAGGGATTCAAGGCCAATCTGGGCAATACAATAACATTATGTCTCTAAAACAAAACTAAAACTAGGTTGAAAAAAATTTCCCAGCACTAGTATTACAACTTACCTGGAATTCATTCATTTAATCATTCATTCATTCCGTTTTGATCCTGGTAAACTGTGGTTCCCATAGAGCAGCAATGGAGTGGTACAGGCACGGTCTGTCCAGGCTTCATAGAAAATGGATTTTTCAGGTTACTTTGTGTCTATAACACAGCTCAAATAGGACAGATGTTTATTCTTTTCCTGTAGTGAATCTGCAGCTGAGCATGTCTGAACCGGTTGGGGGTGGGGGGAGGACATTCTGCTGCCCCTAGCACGTGCTCAAGACTGTTTGCATAACCATGCTTCCAATACAGCAGGAAGAAGAAAGAAAGGCAAGACCTTGTCCTTTAGGGAGGTGACCTGGAAATCCCTTAGACCATTTTGCCCCCTCTTCCCTGAGTGAACTCGACCTCAGAGCCACACTAGCAAAGTTGGTGCCCTGATAGAACTAGGACATTTTAATGCTGGAAAGAAGAGAATCCAGGAATCCAAGAAATCAAAACAACAATCTGCAACAGTAGGATGAATCACAAAAGCATTGTTAGGCTAGGGAAGTCTGTGGCAAAGGTTACTGGCTGACTGAGTCCTCAGATATGAAACAGGGCGGAGGAAGACTAGGAAGTGCACAGGGCTTCTTAAGTTTCCTCACATATGGCCCATTTCACCAGAAGAGTTTTGGTGACCCCAGGTATGTAGGAATATAAAACAGGCACTCAGTCGAACATTTACTGATAATCATAAAGAAATTTACTTTCAAGCAATTCTTTGGGTAGGGTTGGGATAGAGGAGAAGGTGGGGAGATAGCTTGGTGGGCAAAATACTTGTTGCACAAGCATAAGGCCCCGCATTCAGATCCCACCATCCATGCAAACGTCTGGGGCTTCAGTGTGTCTCTGTAACCATAGTCCTGGGGAAGGCAGAGACCAGAGACTCCTAGGGGCTTCTTGACAGCCAAAGCAGTAAGCTCCAGGTTCAGTGATAGACCTTGTTACAAAAATACAATAGTGAAATAGGAGGGCTCCCAATGTCAACCTCTGGGTTCCACATGCTCAAGTACAGACAAATCCACCTGCAAGACAAAGACGTGCACACATCTGCATGAGTTCTTTCCTACTGCACCCTGCCCCACCTCGTGGAAAGCCACTTCTTGCTGTACATATAGTTTTATCATTCATTAAGGAGAAAAGCAAATGTACAGGTTAATGGGATGGGTGAGCTTGTTTACCTTTCCGTAGAGAATTAATTCCCAGCTGAATATTTAACACTGCACTGTGTAGCACATCCTCAACACTTTTCAGAGGTGCACAGTCCTTTTATTTTCCAGTCAGCAATGCTGAGAGTACCCACAAATAATACTGAAAAATGGCAGTAGTTAAAAAATCATTTCCAGAACTGTTAGAAAGTCTATCCTAATTCCAAACCAAAATTCTTTTAATGAGTTTTAAAGCATATTTTTATTTATTGTTTGTTTGGAAATTTCATACACATATACAATATGTTCTGATCAAATCATTTCCCTCCAAACATCTAGTGATTTTTTTAAAAAAATAAAATAAAGCTCACATAAGCAACTTAAGCATCAAATTTCCCTTTAAAGTAAACATTTTCGCACAATACAACCCAAAAATGTACTGATTTGAGACTTAGACTGAGAGATGATGGTAGGAAAACATTAAATCTTTGTTTTTTCATAATCAAGCCATTATATTTCTCTAAGAATCGAGAACCGCCATGTACAGTAAAATGCTGCATTTAAAAACACAGTAGATGTAGATCTGAGCTAAGACATTTGCTGGAGTCATGTGAGCGGTGACACCAGACAGTGGGTGTGTGCTGTGGGTTCAGAACCAAGGCTCAAGTGCAGCTGCTTGATAGGACATGGACAAGGGCTGCCAGCAACCCTCTGCCTCAGTACTTGTTGGGTTTTGAATTAATTTTTGGTTGCTGTGCACTCAGAAACCTTTCACTGCTGACAAACTTTCTGTGACTTTTTTAAGCGTCATGACCCTTGGTTTAAGAAGCTGCGGTGTCATAGCTTGGGGTCAGTGTCCAGTGTGGTTCATCAGTTATCAAGATGCAAGGGCATTCTAGCCCAGCTGTGGTTAACACCAGTGTGCACCAGCATTTGTTGGGGTGGTTGGTTCTTTTTTTTTTTTTTTTTTTTTCTGTCATGATATGTTACTGATTTGCTTGAGGGTCACATAGAATTTCAAGGAATTTTAAAACAACAACCAAAACAAACCACAGACATTTCAAATCTTGAACCTAAAAGCCAACATTGCTTTGTTTTATTTGGATTGCATTTCATGGCTAAATAATAGCAAGGACATCTTAGTCCTTAGCAAAGATGTAAGTCTCAGTATTCAGGAGTTTGATTATGAAGTAACATAATAAAAGATTTGTTTCATACTATCACAGCCCTCCTTCTGAATGTTGTGAAGGGCTATCCCTCTGCAGCTCCAAGAATCTGGGTTCTTTCCTCTAG
Seq C2 exon
TGGATCAGCTGCATCCTGGGCCAGTAGGGTCCTTTGCAGGTGGCCAACCAAGAGAAAGAGGAAGTGGCTCTTGGAATCACAGACCCAGGCTGGGAAGAATTTGTGTGATGCAGTGGCCACCCCCTAAGAGCTGCAGTGATCCTCTCTGAGCCCTTCAGAAAGCACTATGACCACAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063087-Gm10125:NR_033552:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: