MmuEX6001897 @ mm10
Exon Skipping
Gene
ENSMUSG00000024575 | Pde6a
Description
phosphodiesterase 6A, cGMP-specific, rod, alpha [Source:MGI Symbol;Acc:MGI:97524]
Coordinates
chr18:61245541-61253177:+
Coord C1 exon
chr18:61245541-61245605
Coord A exon
chr18:61249946-61250012
Coord C2 exon
chr18:61253130-61253177
Length
67 bp
Sequences
Splice sites
3' ss Seq
TTTATCTTTTGTCTTTACAGGAA
3' ss Score
12.67
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
GAAATTAACTTCTACAAGGTCATTGACTACATCCTGCACGGCAAAGAAGACATCAAAGTCATCCC
Seq A exon
GAACCCACCCGCTGACCACTGGGCTCTAGTGAGTGGTCTCCCCACTTACGTGGCTCAAAATGGTCTG
Seq C2 exon
ATCTGCAATATAATGAATGCGCCTGCAGAGGACTTTTTTGAATTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024575-'6-18,'6-9,11-18=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=FE(11.8=100)
A:
PF0159021=GAF=FE(12.4=100)
C2:
PF0159021=GAF=FE(8.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGTTCCTGACCTCCCTGTC
R:
GAGGCACTGGCATTGTCTCTG
Band lengths:
167-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types