RnoEX0064367 @ rn6
Exon Skipping
Gene
ENSRNOG00000017816 | Pde6a
Description
phosphodiesterase 6A [Source:RGD Symbol;Acc:1306835]
Coordinates
chr18:56572849-56580595:+
Coord C1 exon
chr18:56572849-56572913
Coord A exon
chr18:56577344-56577410
Coord C2 exon
chr18:56580548-56580595
Length
67 bp
Sequences
Splice sites
3' ss Seq
TTTGTCTTTGGCCTTTGCAGGAA
3' ss Score
10.8
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
GAAATTAACTTTTACAAGGTCATTGACTACATCCTGCATGGCAAAGAAGACATCAAAGTAATCCC
Seq A exon
GAACCCACCTGCTGACCACTGGGCTCTAGTTAGCGGTCTTCCCACTTATGTGGCTCAAAATGGTCTG
Seq C2 exon
ATCTGCAATATAATGAATGCGCCTGCAGAGGACTTTTTTGAATTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017816-'5-7,'5-6,6-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=FE(11.8=100)
A:
PF0159021=GAF=FE(12.4=100)
C2:
PF0159021=GAF=FE(8.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTTACAAGGTCATTGACTACATCC
R:
AAAAAGTCCTCTGCAGGCGC
Band lengths:
95-162
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]