MmuEX6002784 @ mm10
Exon Skipping
Gene
ENSMUSG00000029661 | Col1a2
Description
collagen, type I, alpha 2 [Source:MGI Symbol;Acc:MGI:88468]
Coordinates
chr6:4530957-4531345:+
Coord C1 exon
chr6:4530957-4531010
Coord A exon
chr6:4531104-4531154
Coord C2 exon
chr6:4531238-4531345
Length
51 bp
Sequences
Splice sites
3' ss Seq
TGTCTTTATCTCCCACCTAGGGT
3' ss Score
9.51
5' ss Seq
CCTGCTGTG
5' ss Score
-35.28
Exon sequences
Seq C1 exon
GGTGAAGCTGGTGCTGCCGGTCCTTCTGGCCCAGCTGGTCCTCGGGGTAGCCCT
Seq A exon
GGTGAACGTGGTGAAGTTGGCCCTGCTGGCCCCAATGGATTTGCTGGTCCT
Seq C2 exon
GGTGCTGCTGGCCAACCCGGTGCTAAAGGAGAGAAGGGAACCAAAGGGCCTAAGGGTGAAAATGGCATTGTTGGTCCAACCGGGTCTGTTGGAGCTGCTGGCCCATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029661-'56-55,'56-54,57-55
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(4.1=16.7),PF0139113=Collagen=FE(19.3=100)
A:
PF0139113=Collagen=FE(19.3=100)
C2:
PF0139113=Collagen=PD(23.9=58.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTGCCGGTCCTTCTG
R:
AACAGACCCGGTTGGACCAA
Band lengths:
134-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types