MmuEX6002789 @ mm10
Exon Skipping
Gene
ENSMUSG00000029661 | Col1a2
Description
collagen, type I, alpha 2 [Source:MGI Symbol;Acc:MGI:88468]
Coordinates
chr6:4524502-4525926:+
Coord C1 exon
chr6:4524502-4524555
Coord A exon
chr6:4524895-4524929
Coord C2 exon
chr6:4525343-4525926
Length
35 bp
Sequences
Splice sites
3' ss Seq
GGGTCTCCCTGGTCCCTCAGGTA
3' ss Score
8.21
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
GGTGTTCAAGGTGGCAAAGGTGAACAAGGCCCTGCTGGTCCTCCTGGCTTCCAG
Seq A exon
GTACTACTGGAGAAGTTGGCAAGCCCGGAGAAAGG
Seq C2 exon
GGTCTGAGTTCTGAGTCATTTTCTCTAATTGTGATGAATGTGCCTCAATTTAGTTACATTCTGTGGCCTTGTCTCCTTTGTCAACAGTGGGCCACATTAAAGGGACAGCTGGTCAGTAATGAAAGAGATACACATGGGTATACAATTAGCTAGGTAACGTACAGGATATGATCATTCCTATTAAGAAGGAAGTGGTTGTATAGCTAAGATGTGAACGGCCTTGTGGTGTTTGGGACCCTCATCACATTATCAGAGAAGATAGGCTGCTTTGTCAGTTTCATAAAAGCTAAATAATGGCTGATTTTCTGATACCGGGTCTGGCACAGACACATCTTTGATAGCAGCGGTAGTCTCTTTTTGAAATCTTTCTATAAAGCCAAAGGTTTTGTTGTACATTAGAAGGTATACTAAAGCATTGGTGTGTAGAGCCCAGACAGCTTTATTTTCTAAATCAGAATATTTTAGATACCTTAAGCGCAAGTAACTGTAGAGACTACACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029661-'47-45,'47-44,48-45
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(25.8=100),PF0139113=Collagen=PU(0.1=0.0)
A:
PF0139113=Collagen=FE(25.8=100),PF0139113=Collagen=FE(20.2=100)
C2:
PF0139113=Collagen=PD(9.1=40.0),PF0139113=Collagen=FE(16.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTGGCAAAGGTGAACAAGG
R:
ACAAAGGAGACAAGGCCACAG
Band lengths:
127-162
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types